Protein Alignment vab-7 and Scr

DIOPT Version :10

• Sequence 1: NP_499401.1
• Gene: vab-7 / 176521
• WormBaseID: WBGene00006873
• Length: 247
• Species: Caenorhabditis elegans
• Sequence 2: NP_001368995.1
• Gene: Scr / 40833
• FlyBaseID: FBgn0003339
• Length: 564
• Species: Drosophila melanogaster
• Alignment Length: 324
• Identity: 82/324 - (25%)
• Similarity: 109/324 - (33%)
• Gaps: 130/324 - (40%)

 Worm    17 SLVEMVAASRASSFSPPFEQQHHDPMGVVAAAAAAAAAGRHH----------------------- 58
            |:||.||.|.......          |.:|||||||....:|
  Fly   223 SVVESVARSLNKGVLG----------GSLAAAAAAAGLNNNHSGSGVSGGPGNVNVPMHSPGGGD 277

 Worm    59 ----------------------------PYDNR---------DDGQMRRYRTAFSREQIGRLERE 86
                                        |:..|         .:|:.:|.||:::|.|...||:|
  Fly   278 SDSESDSGNEAGSSQNSGNGKKNPPQIYPWMKRVHLGTSTVNANGETKRQRTSYTRYQTLELEKE 342

 Worm    87 FAKENYVSRKTRGELAAELNLPEGTIKVWFQNRRMKDKRQ-----------RVGGLAWPF----- 135
            |....|::|:.|.|:|..|.|.|..||:||||||||.|::           .:|....|:
  Fly   343 FHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMASMNIVPYHMGPYGHPYHQFDI 407

 Worm   136 -PPQMA-------------AYMLNPFAYEMWMKTAAASQF--------------------GATGP 166
             |.|.|             . .||....|.:...||||..                    ||.||
  Fly   408 HPSQFAHLSAXDAWHFSGTGXRLNQLYQEPYQTAAAASAASGYQSQDGGPIGGGSVGVGGGAGGP 472

 Worm   167 G---NGAYGNNGS---STSPSAAGSLPFLPPLGFP-SFLSQNSTKSPSSPHSDDSSKSKNTSSD 223
            |   ||  |:|||   |...|||.|......:.:| .| ||...:. ......|:|..:|...|
  Fly   473 GSLANG--GSNGSGPNSLFASAASSSQAPDCIKYPQEFXSQVIIRQ-QHQQQQDNSMDRNQERD 533

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
vab-7	NP_499401.1	Homeodomain	69..125	CDD:459649	27/55 (49%)
Scr	NP_001368995.1	Homeodomain	325..381	CDD:459649	27/55 (49%)