Protein Alignment vab-7 and lms

DIOPT Version :10

• Sequence 1: NP_499401.1
• Gene: vab-7 / 176521
• WormBaseID: WBGene00006873
• Length: 247
• Species: Caenorhabditis elegans
• Sequence 2: NP_611491.2
• Gene: lms / 37322
• FlyBaseID: FBgn0034520
• Length: 378
• Species: Drosophila melanogaster
• Alignment Length: 299
• Identity: 75/299 - (25%)
• Similarity: 111/299 - (37%)
• Gaps: 110/299 - (36%)

 Worm    19 VEMVAASRASSFSPPFEQQHHDPMG----VVAAAAAAAAAGRHHPYDNRDDG------------- 66
            :|.:.|......|..||....|..|    .:.|:.|::.|......||.|||
  Fly    16 IEQILAKPEMRSSTSFEDSVQDESGRGGNCLGASRASSPATSSCLDDNMDDGKSDIDLASDDGNG 80

 Worm    67 ----QMRRYRTAFSREQIGRLEREFAKENYVSRKTRGELAAELNLPEGTIKVWFQNRRMKDKRQ- 126
                :.:|.|||||..||..||.||.:..|:|...|..||.:|.|.|..||:||||||.|.||:
  Fly    81 LGDDRKKRPRTAFSAAQIKALETEFERGKYLSVAKRTALAKQLQLTETQIKIWFQNRRTKWKRKY 145

 Worm   127 ---------------RVGGLA---------WPF------PPQMAAYMLNPFAYEMWMKTAAASQF 161
                           .:||||         |.|      |..:.:.|||
  Fly   146 TSDVETLASHYYAQLGIGGLARPMVVGDRLWLFSQTPTGPTPIQSIMLN---------------- 194

 Worm   162 GATGPGNGAYGNNGSSTSPSAAGSLPF-----LPPLGFPSFLSQNSTKSPSSPHSDDSSKSKNTS 221
                 |:|:.....|:|:.:.:...|:     :|||..||.:              :|:::...:
  Fly   195 -----GSGSAAPMASATTATGSPMRPYATSGGMPPLPGPSVM--------------ESARNAILA 240

 Worm   222 SDDDESKPVNF------SNSPSSSSPS--------PYST 246
                ..:|:||      :..|:...|:        ||:|
  Fly   241 ----RGQPLNFALPFGVAKPPAGGVPAASYIPRCKPYAT 275

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
vab-7	NP_499401.1	Homeodomain	69..125	CDD:459649	29/55 (53%)
lms	NP_611491.2	Cnd2	33..>106	CDD:450400	21/72 (29%)
		Homeodomain	87..143	CDD:459649	29/55 (53%)