DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nhl-1 and Pal1

DIOPT Version :9

Sequence 1:NP_499028.1 Gene:nhl-1 / 176295 WormBaseID:WBGene00003597 Length:974 Species:Caenorhabditis elegans
Sequence 2:NP_001137630.2 Gene:Pal1 / 36033 FlyBaseID:FBgn0283510 Length:541 Species:Drosophila melanogaster


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nhl-1NP_499028.1 zf-C3HC4 43..83 CDD:278524
FRQ <426..545 CDD:286504
NHL_TRIM71_like 691..974 CDD:271324
NHL repeat 715..754 CDD:271324
YncE 721..>973 CDD:225926
NHL repeat 762..800 CDD:271324
NHL repeat 808..844 CDD:271324
NHL repeat 852..893 CDD:271324
NHL repeat 902..932 CDD:271324
NHL repeat 948..974 CDD:271324
Pal1NP_001137630.2 NHL_PAL_like 97..416 CDD:271328
NHL repeat 111..172 CDD:271328
NHL repeat 178..220 CDD:271328
NHL repeat 230..267 CDD:271328
NHL repeat 283..321 CDD:271328
NHL repeat 330..382 CDD:271328
NHL repeat 388..415 CDD:271328
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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