DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ceh-13 and Ubx

DIOPT Version :9

Sequence 1:NP_498655.1 Gene:ceh-13 / 176069 WormBaseID:WBGene00000437 Length:202 Species:Caenorhabditis elegans
Sequence 2:NP_536752.1 Gene:Ubx / 42034 FlyBaseID:FBgn0003944 Length:389 Species:Drosophila melanogaster


Alignment Length:217 Identity:65/217 - (29%)
Similarity:87/217 - (40%) Gaps:54/217 - (24%)


- Green bases have known domain annotations that are detailed below.


 Worm    30 SSYSPLNHHPADIWAAHPSNYIMGNGH---------VSPPATASGLSPPASRSSNSSAELPTGVT 85
            |..||::|....  |....:...|||:         |:...||...:...|.::..:|...:...
  Fly   171 SGGSPVSHRGGS--AGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAASSLHQ 233

 Worm    86 ASQHNTYKWMHTKRSQRPAAPKKKVI----------------------------DENGTN----- 117
            ||.|..|.|| ....:.|..|.|..|                            |..|||     
  Fly   234 ASNHTFYPWM-AIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRR 297

 Worm   118 -RTNFTTHQLTELEKEFHTAKYVNRTRRTEIASNLKLQEAQVKIWFQNRRMKEKK--------RE 173
             |..:|.:|..||||||||..|:.|.||.|:|..|.|.|.|:||||||||||.||        .|
  Fly   298 GRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKELNE 362

 Worm   174 KEKAFLARNTWESNSPTSSCSG 195
            :||...|:....:.:..::..|
  Fly   363 QEKQAQAQKAAAAAAAAAAVQG 384

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ceh-13NP_498655.1 Homeobox 118..164 CDD:278475 25/45 (56%)
UbxNP_536752.1 Homeobox 299..352 CDD:395001 31/52 (60%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.