DRSC/TRiP Functional Genomics Resources

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Protein Alignment gly-6 and Pgant9

DIOPT Version :9

Sequence 1:NP_001022644.1 Gene:gly-6 / 175558 WormBaseID:WBGene00001631 Length:618 Species:Caenorhabditis elegans
Sequence 2:NP_001097342.1 Gene:Pgant9 / 246627 FlyBaseID:FBgn0050463 Length:650 Species:Drosophila melanogaster


Alignment Length:606 Identity:238/606 - (39%)
Similarity:332/606 - (54%) Gaps:95/606 - (15%)


- Green bases have known domain annotations that are detailed below.


 Worm    45 GEDQISTQKAIKPIARSNYHVVVGHYNGNLPEDKKRNLTSEELNANLYAPHDDW----------- 98
            |:.|...:..|.|        .||.:..:|..::.|...:|:....   |.:|.           
  Fly    90 GQKQAHDEADIPP--------TVGKHKADLQAERMRKKAAEQPKKK---PQEDSKKVIDPPANFE 143

 Worm    99 ---GEGGAGV---SHLTPEQQKLADSTFAVNQFNLLVSDGISVRRSLPEIRKPSCRN-MTYPDNL 156
               ||.|..|   ..::.|.:|..|..:..|.||..|||.|||.|:||:.|...|:: ..|..||
  Fly   144 ENPGELGKPVRLPKEMSDEMKKAVDDGWTKNAFNQYVSDLISVHRTLPDPRDAWCKDEARYLTNL 208

 Worm   157 PTTSVIIVYHNEAYSTLLRTVWSVIDRSPKELLKEIILVDDFSDREFLR---------YPTLDTT 212
            |.|.|||.:||||::.|||||.||:||||:.|:.:||||||:||...|:         ||     
  Fly   209 PKTDVIICFHNEAWTVLLRTVHSVLDRSPEHLIGKIILVDDYSDMPHLKRQLEDYFAAYP----- 268

 Worm   213 LKPLPTDIKIIRSKERVGLIRARMMGAQEAQGDVLTFLDSHCECTKGWLEPLLTRIKLNRKAVPC 277
                  .::|||.::|.||||||::||..|:..|||:||||||||:|||||||.||..|...|.|
  Fly   269 ------KVQIIRGQKREGLIRARILGANHAKSPVLTYLDSHCECTEGWLEPLLDRIARNSTTVVC 327

 Worm   278 PVIDIINDNTFQY----QKGIEMFRGGFNWNLQFRWYGMPTAMAKQHLLDPTG-PIESPTMAGGL 337
            ||||:|:|.|.:|    ..|:.:  |||:|||||.|:.:|....|:|  :.|. |:.||||||||
  Fly   328 PVIDVISDETLEYHYRDSGGVNV--GGFDWNLQFSWHPVPERERKRH--NSTAEPVYSPTMAGGL 388

 Worm   338 FSINRNYFEELGEYDPGMDIWGGENLEMSFRIWQCGGRVEILPCSHVGHVFRKSSPHDFPGKSSG 402
            |||:|.:|:.||.||.|.|||||||||:||:.|.|||.:||:|||||||:|||.||:.:  :|..
  Fly   389 FSIDREFFDRLGTYDSGFDIWGGENLELSFKTWMCGGTLEIVPCSHVGHIFRKRSPYKW--RSGV 451

 Worm   403 KVLNTNLLRVAEVWMDDWKHYFYKIAPQAHRMRSSI----DVSERVELRKKLNCKSFKWYLQNVF 463
            .||..|.:|:||||||::..|:|      ||:.:..    |||:|.:||..|.||||||||.|::
  Fly   452 NVLKKNSVRLAEVWMDEYSQYYY------HRIGNDKGDWGDVSDRRKLRNDLKCKSFKWYLDNIY 510

 Worm   464 QDHFLPTPLDRFGRMTS-SSNSSVCL-AWTLRSSGIKTASTADCLKIFHK---TQLWLYTGDRRI 523
            .:.|:|......|.:.: ......|| |...:....|...|..|    |:   .|.|:.:....|
  Fly   511 PELFIPGDSVAHGEIRNLGYGGRTCLDAPAGKKHQKKAVGTYPC----HRQGGNQYWMLSKAGEI 571

 Worm   524 RTDEHLCLSVVQLLHTTSDWKIQLKEC-AGFDTEYWDFKPKIGRFQNRKTGLCLASPDIFDPTKD 587
            |.|:. ||.     :...|  :.|..| .|...::|.::....:..:..:|.|||    ...:||
  Fly   572 RRDDS-CLD-----YAGKD--VTLFGCHGGKGNQFWTYRENTKQLHHGTSGKCLA----ISESKD 624

 Worm   588 EFNPPIVQKCRSSNDRQNWTI 608
            :.   ::::|.:|..||.||:
  Fly   625 KL---LMEECSASLSRQQWTL 642

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gly-6NP_001022644.1 WcaA 155..451 CDD:223539 161/313 (51%)
pp-GalNAc-T 160..463 CDD:133004 167/320 (52%)
Ricin_B_lectin 474..606 CDD:279046 30/137 (22%)
RICIN 476..608 CDD:238092 31/137 (23%)
Pgant9NP_001097342.1 WcaA 207..>478 CDD:223539 155/293 (53%)
pp-GalNAc-T 213..510 CDD:133004 167/319 (52%)
Ricin_B_lectin 521..640 CDD:279046 30/137 (22%)
RICIN 523..642 CDD:238092 31/137 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D606683at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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