DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment gei-1 and cv-c

DIOPT Version :9

Sequence 1:NP_497694.3 Gene:gei-1 / 175436 WormBaseID:WBGene00001559 Length:1510 Species:Caenorhabditis elegans
Sequence 2:NP_001097786.1 Gene:cv-c / 41749 FlyBaseID:FBgn0285955 Length:2351 Species:Drosophila melanogaster


Alignment Length:1742 Identity:431/1742 - (24%)
Similarity:671/1742 - (38%) Gaps:499/1742 - (28%)


- Green bases have known domain annotations that are detailed below.


 Worm    47 KQQRKSLVIEPD-------ISLILAAGQNQSSSSDDDDTKVQIDSNTLPQNRRKYAGRRNMKK-- 102
            :||:..||::|:       .|..|..|:|::|                |..:...|..|.:..  
  Fly   831 QQQQNGLVLKPEKHATIPLQSFYLDCGRNEAS----------------PATKSNVAYMRTLSAPN 879

 Worm   103 -RFYSTSNLKGNEDENDENSSKQIGTKSLSVRDLNG--DNI----------DFNNRDSVKKWT-- 152
             .|.|.................|...|||:...|||  |.|          :|.:...:::..  
  Fly   880 GGFASGGGGGAARGSGAPALPPQSQRKSLACPPLNGQADTITPTPATHKLTNFQSALKIEEMAAA 944

 Worm   153 ---------SQIFAELESIPSSRR-----GSMEVTRAMTNP---PPELMINLA-----PTLAPPS 195
                     ||:...:|.:.|.|:     |.|| |...:.|   |..:.||.|     ..:.||.
  Fly   945 KGTAMATGESQLATTIEDLKSRRQRQLSGGDME-TMLASQPMSMPKRVGINHAVLTSRNAITPPP 1008

 Worm   196 PMKRKRFPVFDEQEAGFQPIAPVPSPRRQQEDVVGPTFLRDLLTASCSRSPCSESNYS------- 253
            .          ...:..|..|.|.|.:........|.:|.| :|...|.|....|..|       
  Fly  1009 A----------SASSASQSAASVHSAKGSSSAGTTPGYLVD-VTKKGSTSTIWTSEESILRSVGA 1062

 Worm   254 ---DRLATSDTATTQKAS--------------------------------RASSFEW----LENS 279
               |..:||.::..::|:                                :..|..|    |::.
  Fly  1063 VDEDNNSTSSSSACEEATGVLSSGKSGISLDSSGLDNDNNESGIGTATPPKDMSHYWKSHHLQHH 1127

 Worm   280 GHGKYEQCSSDEADRE-VASIEMVK----------------------------------QTEVLQ 309
            .|..:.:|:....|.| |:|:|.::                                  |.::|.
  Fly  1128 HHHHHRKCTGSAQDNESVSSLEALRKMKFQKSGSVASSDDPDVLEVLSQCGSGGEANESQDDMLD 1192

 Worm   310 RKKTIEDLEESVNEL-----------QSLGNGSWFPHP---------PPPPAEARDQIYES---- 350
            .:|......:..:|:           .:.|.|.....|         |||....|.|...|    
  Fly  1193 EEKDKMSKSQDYDEIWDCDCTDGDASSASGGGGVTATPVILRRKYTAPPPILVPRTQRSHSLDHY 1257

 Worm   351 ------------LPASFRNRKSEN--------RKNAVGSVYDNAAISS----------KPSSSET 385
                        ||......||:.        |:....|:...:|.::          .|||:..
  Fly  1258 HSPQPLVHPRKVLPIHHHALKSKERGQLSLVLRQEPFQSLLSPSATAANQLHHFVELPSPSSASL 1322

 Worm   386 TSFSQQKPIIDRKPFSLENLPMVQRLTELSAAKKNADSKNEVAKRSNTFS-LQLAERDAVDACSW 449
            .|.......|........:.||:.:..|:|....|.::::...:.|.:.| ..|||.:||:||.|
  Fly  1323 HSGLGDSGGIQELCTKSNSAPMLLKEREMSRRFDNFEAQHLTLRYSRSQSDRYLAEIEAVEACKW 1387

 Worm   450 LRKAGFSKYADQFEEGKLPI---VASKDPTLLEAD-LRALNRRIDVLNRCHTMKVD-----SVPM 505
            ||.|||.:||..:|:.:.||   ..:||.|.||.| |::|.||:.|||||.||::|     ..|.
  Fly  1388 LRAAGFPQYAQMYEDHQFPIDLNNVAKDHTNLENDQLQSLYRRLCVLNRCATMRLDQSHKPQTPQ 1452

 Worm   506 RRRINNEFPRLDPMKIDDNSGYSSDSWRYGSVGGSHHSNTWSRPSGSDHHVYGGSLARMPNSTSS 570
            ::.           :.||.:...|:.|.:     ..|...|||.         |.:..       
  Fly  1453 QKE-----------ESDDENFALSEHWTF-----QPHIRRWSRI---------GEMGL------- 1485

 Worm   571 AWHHQMADPTRDSRKVLRTDWYDAQNTPPRGRNNDVLETASSAAC------VNELNS-------- 621
                ::..|...|..|.:|:....:::|.|...:....|..:..|      .|:.:|        
  Fly  1486 ----ELPPPGLLSLNVEKTESSSKESSPDRFEEDGAGITLVTPGCSKAGGIPNDGSSLGEGSDSG 1546

 Worm   622 KLQRSQSERIKDRARAIMKKMDLRSTNKRPKETR----------------GRPAPMNIGDPVLVS 670
            :|:||.||||||:|:|::::::...:.:|.::.|                |:.:.:...|.|   
  Fly  1547 RLRRSGSERIKDQAKALLRRVESIKSRRRKRQNRENVVISGPTVLDLSQFGQRSSLRKPDAV--- 1608

 Worm   671 YDTPKNSIRSHHIDRPSILPERGRQLYPTSPY-----QAPSRSKSIAQNNRRGGLVFITPTSPNS 730
            |.||.:         ||.|..  ...:|.:|:     :.||.|.:....||....  .|||:|.|
  Fly  1609 YSTPPS---------PSALSP--MHTFPKAPFFGNDLKVPSHSDNFLSPNRSSPK--RTPTTPRS 1660

 Worm   731 LDTS-------------FGYSDTNSSVVSSHRSNGESRRRELSMPPPSRHRVQMNGPSYPVMDGT 782
            :.||             .|.||.:||..|.  |...|...:||:..||:.|              
  Fly  1661 MRTSPLHFFSSPMSQLKEGKSDDSSSYYSD--SQESSTGGKLSLRKPSKAR-------------- 1709

 Worm   783 LRRREIMPFDSYLYAGNPKMLERYDKTYESPRNLIPDRMYDDL---DDLPLPKSTKTTNSNSTSN 844
                              :.|:|..|.             ||:   .|....:..|....::.||
  Fly  1710 ------------------RFLQRTGKV-------------DDIGAHSDSECHQGRKLLIKDANSN 1743

 Worm   845 SNSLDNKKTDNISMFNDGYYTHEIKTALPRHHNILTTVKPENLKVNTEKIDIISSSDEPIGRTAL 909
            :..:..||                          ||.....||..:.:|.|...||         
  Fly  1744 TTEVKVKK--------------------------LTRGGSLNLGKDPKKRDGFRSS--------- 1773

 Worm   910 TKRSDSGLGSSLSRSPSGPHTQRIRQSLLPYSNATSSSAS-AYSCCSWGSSTKLLDEQQP----- 968
                     |..|||.|....:....:    :.||::..| ......|.|...   |::|     
  Fly  1774 ---------SFRSRSTSRKEAKNDEDT----AGATTNGGSKRQPVVRWHSFQM---EERPNMIFR 1822

 Worm   969 -FFTDMVE-----------LARSIDSLNLIEMTRLRKTAFLRLSSILERNIEGKGVGLVDPDQEE 1021
             .|:..:|           .|.|...|.:|     ||.|.:.|:..:||               .
  Fly  1823 KCFSKKIEPLQEDAGGMPFAAMSAGQLQII-----RKLALVTLTGHMER---------------Y 1867

 Worm  1022 LPSKHV---WSVQRLIKRMKINDGQKREKDVDGDGAVFGVGLDVIFNRTGYFLPRPILEVMKFLR 1083
            .||...   |.:.:.||::|:.|.:        |..||||.|.:|..|:|..||..:....::|:
  Fly  1868 CPSHRSGWNWELPKFIKKIKMPDYK--------DKKVFGVPLLMILQRSGQTLPLAVRAAFRWLQ 1924

 Worm  1084 NIAPETVGIFRKNGVKSRIAELRSIIE---SYSGNTDVFVGENLLDSTQVHDVADLLKQYFRDLP 1145
            ..|.:.||||||:|.||||.:||..||   |.:...|||      |..|.:||||:||||||:||
  Fly  1925 LNALDQVGIFRKSGGKSRIMKLREQIEVTDSTAECMDVF------DLQQAYDVADMLKQYFRELP 1983

 Worm  1146 EPLMTVKMSEVFANICSVVPDVERITALQYAILLLPDENREALKTLLLFLKEVSRNSQVNNMTAQ 1210
            |.|:|.||||.|..|...:|...|:.|:|.|:|||||||||.|..||.||..|:.|||.|.||:.
  Fly  1984 ESLLTTKMSETFVAIFQHLPAEVRLDAVQCAVLLLPDENREILYVLLEFLTIVAANSQQNQMTSN 2048

 Worm  1211 NLSVCFTPSLFQLGASRLDKVTPGNRRHKTVGATGLPSEKEMKEARACQLCLTMLIEYVQTVFMV 1275
            ||.||...|:|....|........:.|.|..| :|:|..||:.||:|...||:.:||:.:.::..
  Fly  2049 NLGVCLAQSIFHSSISTGSASVSASPRRKGKG-SGMPDMKELAEAKASHECLSFMIEHYKQIYTA 2112

 Worm  1276 PDGLDDSMD---AEDDNP-NLTELG----LKGPRSFLVDRVIDLIRDHSDQWKNWTIEGSFR--G 1330
            ........:   .|:..| .|..||    ....|.:|.:.....|::..::.:.|....|..  .
  Fly  2113 AKEKLSKCNFSYMEESKPLPLEALGEGMQFHNWRGYLYECTSATIKEGREKTRGWFSINSLNDSS 2177

 Worm  1331 IEISSKRPSDSHPLKTFRVWLNVPAGPKSVMMRLLKERYTWDSSVINWRHLEYVSAPDTDIHQYV 1395
            ::|:.|:..|.|||:.:|....:...||.|:..::|:|.:||::::..:.::.:. ..|:|:||.
  Fly  2178 VDIAYKKVGDGHPLRLWRCSTEIEGPPKEVLEFVIKQRASWDTNLLQCQTVKKLD-DRTEIYQYA 2241

 Worm  1396 VNETIGHPTKDCHVARFHSSGLTEIRGACAIAERSVKCTEDQ-LLGGVSATIFDQRFLIEPVSGG 1459
            ::   |..|.|..|.|...:.|.  ||||.|.|.|:...:.: |.|.|...:...|:||||...|
  Fly  2242 LD---GQLTTDFCVLRSWQTDLP--RGACVIVETSIDHAKAKPLFGAVRGVVLASRYLIEPCGSG 2301

 Worm  1460 QSRVNYIARVDLKGRSLQWYNKSFGSIMCRHLDRLRESF-HLGDKGGPETNV 1510
            :|||.::||||:||::.:||||::|.|...:|.|:|.:| |:.|  |||:.|
  Fly  2302 RSRVMHLARVDVKGKTPEWYNKNYGHICSHYLSRIRLAFKHVAD--GPESKV 2351

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gei-1NP_497694.3 SAM_superfamily 444..499 CDD:387673 30/58 (52%)
RhoGAP_DLC1 1052..1279 CDD:239840 102/229 (45%)
SRPBCC 1302..1501 CDD:387369 64/202 (32%)
cv-cNP_001097786.1 SAM_DLC1,2-like 1382..1441 CDD:188937 30/58 (52%)
RhoGAP_DLC1 1893..2116 CDD:239840 102/229 (45%)
SRPBCC 2148..2343 CDD:301327 63/200 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 129 1.000 Domainoid score I3278
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S4702
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001209
OrthoInspector 1 1.000 - - oto20818
orthoMCL 1 0.900 - - OOG6_103453
Panther 1 1.100 - - LDO PTHR12659
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3060
SonicParanoid 1 1.000 - - X752
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1110.890

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