DRSC/TRiP Functional Genomics Resources

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Protein Alignment hlh-3 and Fer1

DIOPT Version :9

Sequence 1:NP_495938.4 Gene:hlh-3 / 174447 WormBaseID:WBGene00001950 Length:170 Species:Caenorhabditis elegans
Sequence 2:NP_001262334.1 Gene:Fer1 / 2768661 FlyBaseID:FBgn0037475 Length:256 Species:Drosophila melanogaster


Alignment Length:176 Identity:46/176 - (26%)
Similarity:74/176 - (42%) Gaps:36/176 - (20%)


- Green bases have known domain annotations that are detailed below.


 Worm    21 SSVTKQTKQKRNERERKRVDQVNQGFVLLQERVPKAAGNKAKLSKVETLREAARYIQELQKQL-- 83
            :|...|.:|..|.|||:|:..:|:.|..|:..:|.....| :||||:||:.|..||..|.:.:  
  Fly    81 ASQMAQQRQAANLRERRRMQSINEAFEGLRTHIPTLPYEK-RLSKVDTLKLAISYITFLSEMVKK 144

 Worm    84 -------GMS-STSFHNSMPADFPTPEQS-------------PVYPQSVCSMMAQTPSPSYTSPY 127
                   |:| ..::....|......:::             ..||.|  .:.|:|.:|.  .|.
  Fly   145 DKNGNEPGLSLQRNYQKEPPKKIILKDRTGGVAHSLSWYRKGDRYPGS--KLYARTWTPE--DPR 205

 Worm   128 YPPPQMM------SSNQHDMSSHYYQESSSSSASTS--GDHHSFYS 165
            .|..|.:      :|||:..|:....:.|.|.|..|  |...|.:|
  Fly   206 GPHSQPLPLYNNSNSNQNQNSNQSSDDFSGSGADMSDPGAAASIFS 251

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hlh-3NP_495938.4 HLH 32..83 CDD:197674 20/50 (40%)
Fer1NP_001262334.1 HLH 92..144 CDD:197674 20/52 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4029
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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