DRSC/TRiP Functional Genomics Resources

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Protein Alignment cdc-48.2 and TER94

DIOPT Version :9

Sequence 1:NP_495705.1 Gene:cdc-48.2 / 174309 WormBaseID:WBGene00008053 Length:810 Species:Caenorhabditis elegans
Sequence 2:NP_001097249.1 Gene:TER94 / 36040 FlyBaseID:FBgn0286784 Length:826 Species:Drosophila melanogaster


Alignment Length:826 Identity:637/826 - (77%)
Similarity:722/826 - (87%) Gaps:26/826 - (3%)


- Green bases have known domain annotations that are detailed below.


 Worm     1 MASVPTQRDEKEK------KNDELATAILKDKKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLFR 59
            |....:::|||.|      |.::|||||||.|.||||||::::.|||||:|.|||||||||.|||
  Fly    11 MRGYHSEQDEKMKPKDSFDKREDLATAILKRKDRPNRLIVEEAQNDDNSVVSLSQAKMDELQLFR 75

 Worm    60 GDSVILKGKKRRETVSIVLNADNCPNDKIKMNKVVRNNLRSRLGDVVSISSA-QLEYGKRVHVLP 123
            ||:||||||:|:|||.|||:.|.||::||:||:||||||...|.||||:.|. .::|||||.:||
  Fly    76 GDTVILKGKRRKETVCIVLSDDTCPDEKIRMNRVVRNNLCVHLSDVVSVQSCPDVKYGKRVRILP 140

 Worm   124 IDDTIEGLTGNLFDVFLRPYFTDAYRPVHKGDIFTVQAAMRTVEFKVVETDPAPACIVAPDTVIH 188
            ||::.||:|||||:::|:|||.:||||:|.||.|.|:||||.:|||||.|||.|.|||||:|||.
  Fly   141 IDESTEGVTGNLFEIYLKPYFLEAYRPIHMGDNFIVRAAMRPIEFKVVLTDPEPYCIVAPETVIF 205

 Worm   189 YEGDPIKREEEEEALNEVGYDDLGGVRKQLAQIKEMVELPLRHPQLFKAIGVKPPRGILLFGPPG 253
            .:|||||||||||:||.|||||:||.||||||||||||||||||.||||||||||||||::||||
  Fly   206 CDGDPIKREEEEESLNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPG 270

 Worm   254 TGKTLIARAVANETGAFFFLINGPEIMSKMSGESESNLRKAFAECEKNSPAILFIDEIDAIAPKR 318
            |||||||||||||||||||||||||||||::|||||||||||.|.|||||||:||||||||||||
  Fly   271 TGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAIIFIDEIDAIAPKR 335

 Worm   319 EKAHGEVEKRIVSQLLTLMDGLKTRAHVVVIAATNRPNSIDGALRRFGRFDREIDIGIPDAVGRL 383
            :|.|||||:||||||||||||:|..:|::|:||||||||||.|||||||||||||||||||.|||
  Fly   336 DKTHGEVERRIVSQLLTLMDGMKKSSHLIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRL 400

 Worm   384 EILRIHTKNMKLGEDVDLEQVANECHGFVGADLASLCSEAAIQQIREKMELIDLEDDTIDAEVLN 448
            |:||||||||||.:||||||:|.|.||.|||||||||||||:|||||||:|||||||.||||||.
  Fly   401 EVLRIHTKNMKLHDDVDLEQIAAESHGHVGADLASLCSEAALQQIREKMDLIDLEDDKIDAEVLA 465

 Worm   449 SLAVTMENFRFAMGKSSPSALREAVVETPNTTWSDIGGLQNVKRELQELVQYPVEHPEKYLKFGM 513
            ||||||||||:||.|||||||||.|||.|||||:|||||::||:|||||||||||||:|:|||||
  Fly   466 SLAVTMENFRYAMTKSSPSALRETVVEVPNTTWTDIGGLESVKKELQELVQYPVEHPDKFLKFGM 530

 Worm   514 QPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCV 578
            |||||||||||||||||||||||||||||||||:|||||||||||||||||||:|||||:|||||
  Fly   531 QPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAPCV 595

 Worm   579 LFFDELDSIAKARGGSVGDAGGAADRVINQVLTEMDGMNAKKNVFIIGATNRPDIIDPAVLRPGR 643
            |||||||||||||||:||||||||||||||:|||||||.||||||||||||||||||||:|||||
  Fly   596 LFFDELDSIAKARGGNVGDAGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGR 660

 Worm   644 LDQLIYIPLPDEASRLQIFKASLRKTPLSADLDLNFLAKNTVGFSGADLTEICQRACKLAIRESI 708
            |||||||||||:.||..|.||:|||:||:.::||.::||.|.||||||||||||||||||||::|
  Fly   661 LDQLIYIPLPDDKSREAILKANLRKSPLAKEVDLTYIAKVTQGFSGADLTEICQRACKLAIRQAI 725

 Worm   709 EREIRQEKERQDRSARGEELMEDELADPVPEITRAHFEEAMKFARRSVTDNDIRKYEMFAQTLQQ 773
            |.|||:||||.:......::.||   |||||||.||||||||||||||:||||||||||||||||
  Fly   726 EAEIRREKERAENQNSAMDMDED---DPVPEITSAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQ 787

 Worm   774 SRGFGNNFKFPGEAPSAGQPVGGNGGSGG---------NDDDDLYN 810
            |||||.||:|||:       .|...|||.         |.|||||:
  Fly   788 SRGFGQNFRFPGQ-------TGNTSGSGNNLPVNSPGDNGDDDLYS 826

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cdc-48.2NP_495705.1 CDC48_N 31..112 CDD:280513 55/81 (68%)
CDC48 44..773 CDD:273521 590/729 (81%)
CDC48_2 136..196 CDD:215011 39/59 (66%)
AAA 246..375 CDD:278434 110/128 (86%)
AAA 519..652 CDD:278434 125/132 (95%)
Vps4_C <725..769 CDD:286426 33/43 (77%)
TER94NP_001097249.1 CDC48 47..787 CDD:273521 598/742 (81%)
CDC48_N 47..129 CDD:280513 55/81 (68%)
CDC48_2 153..213 CDD:215011 39/59 (66%)
AAA 263..392 CDD:278434 110/128 (86%)
AAA 536..669 CDD:278434 125/132 (95%)
Vps4_C <741..783 CDD:286426 33/44 (75%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160158378
Domainoid 1 1.000 265 1.000 Domainoid score I1009
eggNOG 1 0.900 - - E1_COG0464
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H5168
Inparanoid 1 1.050 1264 1.000 Inparanoid score I79
Isobase 1 0.950 - 0 Normalized mean entropy S74
OMA 1 1.010 - - QHG60945
OrthoDB 1 1.010 - - D169540at33208
OrthoFinder 1 1.000 - - FOG0000137
OrthoInspector 1 1.000 - - otm14364
orthoMCL 1 0.900 - - OOG6_100525
Panther 1 1.100 - - LDO PTHR23077
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R182
SonicParanoid 1 1.000 - - X1760
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1615.790

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