DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment clsp-1 and Claspin

DIOPT Version :9

Sequence 1:NP_001251008.1 Gene:clsp-1 / 172742 WormBaseID:WBGene00009127 Length:752 Species:Caenorhabditis elegans
Sequence 2:NP_001286934.1 Gene:Claspin / 326205 FlyBaseID:FBgn0052251 Length:1465 Species:Drosophila melanogaster


Alignment Length:898 Identity:195/898 - (21%)
Similarity:348/898 - (38%) Gaps:285/898 - (31%)


- Green bases have known domain annotations that are detailed below.


 Worm    14 DDTDSPSSLVAEHTMSDSQEQLISSENTEVDKQAEEDRKLRRLNRRKA-----LALERSPLP--- 70
            |||....::||:   |.::|:.|:|.:|....:..::.::::....|:     |..|...||   
  Fly   653 DDTVGDEAMVAD---SITEEEPIASTSTAAALKLADNFEIQQETNAKSPSKVCLVTEVVELPKLD 714

 Worm    71 -------------VPKLGRVLL----------------SANSTIDLTNED---------DDPSNK 97
                         .||:..|:.                ..|..|||...|         ||..|:
  Fly   715 LSTINITPSSKPATPKISEVIRQLKIEKSLDESPSLKGDPNMVIDLETGDMFAKKPTGVDDLLNR 779

 Worm    98 WFKKTFNAEK------------------IPKLAKSPEEAKLFAVPR------KISKNAPKSLLTS 138
             ..||..|:|                  :.|::....|.::...|:      |:.::. |:|:| 
  Fly   780 -LMKTREAKKHKTTETVNILTTEHGKLEMSKVSIHLHEEEIAKEPKPGAGYMKMQEHL-KTLIT- 841

 Worm   139 ETLKKKLQASMSAKRRKEQEQRRKMYEEDNEHLKAGSDEEEEEDVVFKKKKGKKPVNEEE----- 198
               ||:    |...|:|:.|::.||.|::.|    |.|.:||.:...|....:..:||:|     
  Fly   842 ---KKR----MEDLRKKQAEEQEKMAEDEEE----GMDVDEEYEPEDKPGYAEVTINEDEEIIDK 895

 Worm   199 -----------YKSEDDEDYEPENSGEEDS-DEKNNGRADDEMSVNLLNDSFTYDVFNNVKRSGP 251
                       .::::|.|.:||::..||| ||||:..::.|...|...::.|......:|    
  Fly   896 VDSTAEDDGDAEENKNDADEDPEDNPVEDSEDEKNDSESEQECEANPEPETQTRKKNRIIK---- 956

 Worm   252 GSTVSNFDSRSEADVVEKNGVVQLP--------TMTEI----------------TGGSNDILNLC 292
                :..|..|:.|.::   ::|.|        |.|::                :...|::|:||
  Fly   957 ----AFEDDNSDEDDLD---LLQTPKPSNVAPITATQLQLSAHKLFDVETRRTASDEENELLDLC 1014

 Worm   293 PGSFGVSQSAGFPDTLQMLIEEDTTERKI--NLPQN--------------------STSVSSDKP 335
            .|.        ||.|..:..:..:.:..:  .:|..                    :|.:.|..|
  Fly  1015 SGQ--------FPQTQMLSSDAPSVDTAVISQIPMTQFGGSSQAADELEGLCSGTFATQLPSQAP 1071

 Worm   336 RLEESESEDEDDVGVKRRLPAVKNHRVLDSDEE--DDVIEETLPSQDVFGSGTLEDSETIKEICE 398
             .::.|.::|.:|      ||...:|::.||||  :|.:|...|..              |::.:
  Fly  1072 -TQQPEQQEESEV------PAAVANRIVSSDEEAQEDALEVDKPRN--------------KKLTK 1115

 Worm   399 KSGEFTEKIETVLEEKTELKRVVLSDGEDSDEEAEEAEEEGDDEEEPEEDDIESENDEAETEGVE 463
            |..:...|:.             .||.||||:|.||.:||.|  .||.|:..|:..|        
  Fly  1116 KRPKKKAKLG-------------FSDDEDSDDEVEEFDEESD--AEPVEEIPETFVD-------- 1157

 Worm   464 APDPNFDDEDDELAILKRLQHQEYKQKIKKRTLFDDEASLSGDDVGSDLEDEEGMENVYEAEEGD 528
                 :|.|::|:.:    :..:..:||:.....|.||.||..:.||..|||:.|:. |:.|.||
  Fly  1158 -----YDSEENEIVV----EMTKKDRKIRAANFVDKEAELSESEWGSADEDEKNMDE-YDIELGD 1212

 Worm   529 ADDVPDNDTIRRQNHKLLLKQENDKEQRELAKLQDRLLADGDLGGVETNRQFRFKLREEVQIQMG 593
            .|.. |.|.:|.:..::..::..|::.||:.|::: ||.:.:..|....||||:|     .::.|
  Fly  1213 EDQF-DRDKLRHELGQIHARKMMDQDIREVRKIKE-LLFEEEEEGANRQRQFRWK-----NVEAG 1270

 Worm   594 --------DDVDGNDGDGEDDEPEEDEQKKKERAEMIKFKYEHAEELML---------------- 634
                    |:.:||||.|:    ||:|...:      |.:||. |:|:|                
  Fly  1271 FSLDDNRTDNGEGNDGSGD----EENEHLWR------KIRYER-EQLLLEKGLKPEVASPLSTSV 1324

 Worm   635 LDEPKQGDDMFARAGKLFKKTEKTVIEFSEETMFKPRLSKPSLLSKTTLAVTFQEVLNGPGGAAK 699
            ::....|:....|...:. .::||.:|..:        :.|.|:|||......:..:.|......
  Fly  1325 INTSNNGNSPAIRRLNII-SSKKTTVEVKK--------NSPFLISKTIAGKQQKSAVRGSFLIRD 1380

 Worm   700 QMYVQSFEKPTPLSTGHISSPSSRLSTGKRLLKSPESSASAKRVRSSKLSSLE 752
            |..:......|..::|.:.:....:|.         .||.||....:.|:..|
  Fly  1381 QQTLSKLAGLTKGTSGDVDAAEGTISV---------KSAKAKNFVFATLTEEE 1424

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
clsp-1NP_001251008.1 None
ClaspinNP_001286934.1 infB 58..>180 CDD:177089
2A1904 <96..411 CDD:273344
MDN1 <861..947 CDD:227596 23/89 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160162546
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S8226
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0007571
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR14396
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.980

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