Protein Alignment rnf-145 and HRD1

DIOPT Version :9

• Sequence 1: NP_491382.2
• Gene: rnf-145 / 172053
• WormBaseID: WBGene00022471
• Length: 742
• Species: Caenorhabditis elegans
• Sequence 2: NP_014630.1
• Gene: HRD1 / 854149
• SGDID: S000005373
• Length: 551
• Species: Saccharomyces cerevisiae
• Alignment Length: 385
• Identity: 80/385 - (20%)
• Similarity: 137/385 - (35%)
• Gaps: 84/385 - (21%)

 Worm   350 LTKLITGGTR--SHGHVLAHSGYTEAVSVVILCIQTGFLGMQVEQK---TILLALVLYIVISALL 409
            ||||:.|..|  .|.|:.....:|        .|.|.|:.....::   |:....:|.:.:....
Yeast    66 LTKLLFGELRLIEHEHIFERLPFT--------IINTLFMSSLFHERYFFTVAFFGLLLLYLKVFH 122

 Worm   410 QSLFEIIEVVLLNLPSSPTASRARHARCICIALLLVVIPF----------FTTK------TMLAL 458
            ..|.:.:|.:|.::..|.|......:|.....:||.|:.:          :|.:      |.|.|
Yeast   123 WILKDRLEALLQSINDSTTMKTLIFSRFSFNLVLLAVVDYQIITRCISSIYTNQKSDIESTSLYL 187

 Worm   459 LPIDIYTAIII--ANSATVTA----------RAIGVILKYIV-------LIVETKSEEPWEGIDD 504
            :.:..:|.::|  .|....|.          :::.....:||       ..||:...:|....||
Yeast   188 IQVMEFTMLLIDLLNLFLQTCLNFWEFYRSQQSLSNENNHIVHGDPTDENTVESDQSQPVLNDDD 252

 Worm   505 LTYYIDCANKGIE--LLAAKVVMVFGCMQVVKVGFS----FATFAILLFHVIVNIYKRLEHTVSF 563
            .....|....|:|  .:..|.:.||.......:..|    |....:||..|:.:|....:...|.
Yeast   253 DDDDDDRQFTGLEGKFMYEKAIDVFTRFLKTALHLSMLIPFRMPMMLLKDVVWDILALYQSGTSL 317

 Worm   564 IKNRNAAVKNINRLSKADVVQLRER---EDVCAICFIEM-------------KEEARITPCKHYF 612
            .|......:..:.|....|.||:..   :::|.||..|:             |:..|: ||.|..
Yeast   318 WKIWRNNKQLDDTLVTVTVEQLQNSANDDNICIICMDELIHSPNQQTWKNKNKKPKRL-PCGHIL 381

 Worm   613 HGPCLRKWLAVKMVCPLCYTYMKEDDFDSK---------SSSSGTLNEVQQNEEGAAVEE 663
            |..||:.|:.....||:|    :...||.|         |:|..|......:..|.|.::
Yeast   382 HLSCLKNWMERSQTCPIC----RLPVFDEKGNVVQTTFTSNSDITTQTTVTDSTGIATDQ 437

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
rnf-145	NP_491382.2	TRC8_N	49..556	CDD:372682	50/251 (20%)
		RING-H2_RNF139_like	590..631	CDD:319390	15/53 (28%)
HRD1	NP_014630.1	HRD1	5..551	CDD:227568	80/385 (21%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG5243
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	1.810