DRSC/TRiP Functional Genomics Resources

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Protein Alignment rnf-145 and Trc8

DIOPT Version :9

Sequence 1:NP_491382.2 Gene:rnf-145 / 172053 WormBaseID:WBGene00022471 Length:742 Species:Caenorhabditis elegans
Sequence 2:NP_996303.1 Gene:Trc8 / 43476 FlyBaseID:FBgn0039668 Length:809 Species:Drosophila melanogaster


Alignment Length:704 Identity:163/704 - (23%)
Similarity:286/704 - (40%) Gaps:111/704 - (15%)


- Green bases have known domain annotations that are detailed below.


 Worm    29 SVRLGVAQMDTGFKKIKEMSIMVLETGLRLPGLLFIELLWRYQGFSFEDISDDMMKQTPLSYFDI 93
            |::...:.|.|..:.:.|.||.......:..|:|         ...|..:.:::.|...|:....
  Fly    66 SIKELFSHMTTSAQSVLEQSIEKASEAAKTHGML---------SSGFNSLMNELSKDQTLADVLS 121

 Worm    94 PTMLDFVHRRNFDHHAAIILSYFVIFISLMFLTLPLSRLIRMYSHFLSVFLFGVAY--KLSAIYV 156
            .|.:.||            |..|....:.....|....|:.:|....|:.|..::|  .:||:.:
  Fly   122 TTTVKFV------------LCVFAFLSAACIFMLWTRHLVMVYMFLTSLGLTFLSYWSNVSALAL 174

 Worm   157 DLEMKTGEEEL-KLDGLIKLERHGF------HFLAQMLLVVLQSML-LEVDGEPWRVALP-VFAL 212
            .....:..|:| .|:....|:..|.      |.:||..:.:|.:.: |....|..:.::| :||.
  Fly   175 TERSPSMVEDLMSLNTTRLLDSGGVVMSLAPHLMAQWFMGMLFAYIHLGPRFEHVQRSMPIIFAS 239

 Worm   213 PIVARMCGCPMDKLKNAHNYACTGTMIFIATYMLYRAPSLIKSTKTALRQIKAVFMV-------H 270
            ||:..|...|...:::.       .::.:.|.::....:|::|...|.|.:...:..       .
  Fly   240 PILLAMLPLPAKVVQHL-------PVVAVFTPIILTKITLMQSAMEASRTVYNGYQYAMNFVSNF 297

 Worm   271 GLADGVAVLWRKLRILELLTFTWITMFLMVLYVELIDKG----RTWSEVGRILLTG----VAETT 327
            ||:..:...|::|.:..:|...|.        :.||..|    .|.|:....|:|.    :.:..
  Fly   298 GLSALIENEWQRLNVPNVLRVFWT--------IRLIQGGYALATTESDEPLDLMTATQKLLVDGC 354

 Worm   328 NTPITLAALAVSVSYVCKWIADLTKLITGGTRSHGHVLAHS------GYTEAVSVVILCIQTGFL 386
            .|...:..:...:|..|.:|         |.....::|.:.      |...||...||.:|||..
  Fly   355 ETMTAVLGMTGVISMFCHYI---------GRGFQWYLLTYDDEEKSLGTVSAVLFYILALQTGLT 410

 Worm   387 GMQVEQKTILLALVLYIVISALLQSLFEIIEVVLLNLPSSPTASRARHARCICIALLLVVIPFFT 451
            .:..:::.|.|...|.::::|||..|..|:..:|::|.::...||.||.|.:.:...|||:....
  Fly   411 SLSPDKRFIRLCRNLCLLMTALLHFLHNIVSPILMSLSAARNPSRKRHVRALSVCAFLVVLSVSL 475

 Worm   452 TKTMLALLPIDIYTAIIIANSATVTARAIGVILKYIVLIVETKSEEPWEGIDDLTYYIDCANKGI 516
            ...:.:...|..:...:.|.|..|..:.:..:..|.:.:::.:.:..||.:||..||:......:
  Fly   476 LYHLWSQQSISTWLLAVTAFSVEVVVKVLVSLATYTLFLLDARRQFFWEKLDDYLYYVRAFGNSV 540

 Worm   517 ELLAAKVVMVFGCMQVVKVGFSFAT----FAILL-FHVIVNIYKRLEHTVSFIKNRNAAVKNINR 576
            |.....::.:.|...::......||    .||:: .|...||:.......|....|.:||..|:.
  Fly   541 EFCFGILLFINGAWILIFESAQNATGGGIRAIMMCIHAYFNIWCEARAGWSVFMKRRSAVHKISA 605

 Worm   577 LSKADVVQLREREDVCAICFIEMKEEARITPCKHYFHGPCLRKWLAVKMVCPLCYTYMKEDDFDS 641
            |.:|...||:..:||||||:.|| ..|:||.|:|:|||.||||||.|:..||||:..|...|   
  Fly   606 LPEATPAQLQAFDDVCAICYQEM-YSAKITRCRHFFHGVCLRKWLYVQDRCPLCHEIMMYTD--- 666

 Worm   642 KSSSSGTLNEVQQNEEGAAVEENPENPEEQP-------EAPNA-------ERAP 681
                       :.:|.....|..|....|||       :|.||       ||||
  Fly   667 -----------KADENAPEAEPAPAAQAEQPMRIYPRDDANNAAAQRRSPERAP 709

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rnf-145NP_491382.2 TRC8_N 49..556 CDD:372682 107/543 (20%)
RING-H2_RNF139_like 590..631 CDD:319390 26/40 (65%)
Trc8NP_996303.1 TRC8_N 122..590 CDD:290425 101/503 (20%)
zf-rbx1 <618..659 CDD:289448 26/41 (63%)
zf-RING_2 619..659 CDD:290367 26/40 (65%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 72 1.000 Domainoid score I6105
eggNOG 1 0.900 - - E1_COG5243
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 145 1.000 Inparanoid score I3028
Isobase 1 0.950 - 0 Normalized mean entropy S5880
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D302551at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - oto17303
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
98.780

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