DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pif2 and Gm11569

DIOPT Version :9

Sequence 1:NP_731093.2 Gene:Pif2 / 170876 FlyBaseID:FBgn0046873 Length:118 Species:Drosophila melanogaster
Sequence 2:NP_001092782.1 Gene:Gm11569 / 670472 MGIID:3709346 Length:180 Species:Mus musculus


Alignment Length:158 Identity:77/158 - (48%)
Similarity:82/158 - (51%) Gaps:42/158 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MCSPCCGSCCG------PCCSP-CC-SPCCPPCCNDCCGSCCSP-CC-GPCCSP-CCGP-CC-SP 52
            |.|.||||.|.      .||.| || :.||.|.|  |..|||.| || ..||.| ||.| || |.
Mouse     1 MVSSCCGSVCSEEGCGQSCCQPSCCQTTCCRPSC--CVSSCCRPQCCQSVCCQPTCCRPSCCISS 63

  Fly    53 CCSP-CCTP-CC-TPCCTP-CCK--CCTP-CCVP-CCTPCC-------TPCCTP-CCT-PCCSP- 99
            ||.| ||.| || :.||.| ||:  ||.| ||.| ||.|||       :.||.| ||| .||.| 
Mouse    64 CCRPSCCRPSCCVSSCCRPQCCQSVCCQPTCCRPSCCRPCCGSSSCCGSSCCRPSCCTSSCCRPI 128

  Fly   100 -----CCGP-CC-SPCCSP--CGGSKCK 118
                 ||.| || |.||.|  |..|.|:
Mouse   129 CCQATCCRPGCCVSSCCRPQCCISSCCR 156

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pif2NP_731093.2 None
Gm11569NP_001092782.1 Keratin_B2 3..154 CDD:279797 74/152 (49%)
Keratin_B2_2 3..42 CDD:290596 19/40 (48%)
Keratin_B2_2 24..68 CDD:290596 24/45 (53%)
Keratin_B2_2 49..93 CDD:290596 24/43 (56%)
Keratin_B2_2 129..173 CDD:290596 12/28 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

Return to query results.
Submit another query.