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Protein Alignment Tmed1 and CHOp24

DIOPT Version :10

Sequence 1:	NP_034874.2	Gene:	Tmed1 / 17083	MGIID:	106201	Length:	227	Species:	Mus musculus
Sequence 2:	NP_572165.1	Gene:	CHOp24 / 31382	FlyBaseID:	FBgn0029709	Length:	208	Species:	Drosophila melanogaster

Alignment Length:	196	Identity:	55/196 - (28%)
Similarity:	91/196 - (46%)	Gaps:	16/196 - (8%)

- Green bases have known domain annotations that are detailed below.

Mouse    34 FTFLLPAGRKQCFYQSAPANASLETEYQVIGGAGLDVDFTLESPQGVLLVSESRKADGVHTVEPT 98
            |...:.|..::||:::..........::||.|..||||..:..|...::....:::.|.:|....
  Fly    25 FIVSVDAHNEECFFENVEGGTKFGVTFEVIDGGFLDVDIKISGPDNHVMHESEKESSGKYTFVAP 89

Mouse    99 EAGDYRLCFDNSFSTISEKLVFFEL-IFDSFQDEEEVEGWAEAVEPEEMLDVKMEDIKESIETMR 162
            ..|.|.:||:|..|:::.|||.|.: :.|:.|......|      .||:...|:||:...:....
  Fly    90 AKGTYTVCFNNERSSMTPKLVMFSIDVGDAPQRAPGAPG------EEEVGHTKLEDMIRELSGTL 148

Mouse   163 TRLERSIQMLTLLRAFEARD---RNLQEDNLERVNFWSAANVAVLLLVAVLQVCTLKRFFHDKRP 224
            |.::...:.:      ..||   |::.|:...||..||.....||:|:.|.||..|||||..||.
  Fly   149 TSVKHEQEYM------HVRDKIHRSVNENTNSRVVLWSTFEALVLVLMTVGQVYYLKRFFEVKRV 207

Mouse   225 V 225
            |
  Fly   208 V 208

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.