DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Slc5a6 and CG31262

DIOPT Version :9

Sequence 1:NP_570102.1 Gene:Slc5a6 / 170551 RGDID:69648 Length:634 Species:Rattus norvegicus
Sequence 2:NP_001138069.2 Gene:CG31262 / 318649 FlyBaseID:FBgn0051262 Length:579 Species:Drosophila melanogaster


Alignment Length:594 Identity:188/594 - (31%)
Similarity:301/594 - (50%) Gaps:62/594 - (10%)


- Green bases have known domain annotations that are detailed below.


  Rat    23 FSVVDYVVFGLLLVLSLVIGLYHAC-----------------RGWGRHTVGELLMADRKMGCLPV 70
            |..|||:|...:.:||...|:|...                 ..:|...:.|.||..|.|..:||
  Fly     6 FGTVDYLVLVAMTLLSTGTGIYFGALKKKHKNKKSVSEDNRRTNFGSEKIDEYLMGSRNMKVIPV 70

  Rat    71 ALSLLATFQSAVAILGGPAEIYRFGTQYWFLGCSYFLGLLIPAHIFIPVFYRLHLTSAYEYLELR 135
            ::    |.....:|:|.|:|||.:||||:.:..:..|..:..:::::||:..|.:.||||||.||
  Fly    71 SI----TLYRVTSIIGTPSEIYHYGTQYYLIIVAIILQGIAFSYVYLPVYSALQIGSAYEYLGLR 131

  Rat   136 FNKAVRICGTVTFIFQMVVYMGVALYAPSLALNAVTGFDLWLSVLALGIVCNIYTALGGLKAVIW 200
            ||..:|...:..::|.::.|:...:|.|:|:|:.|:|.:..|..|.:.:.|..||.:||||||:.
  Fly   132 FNSIIRTTASFMYVFGILTYLPFIVYVPALSLSQVSGLNTHLIGLVIILACVTYTFMGGLKAVVH 196

  Rat   201 TDVFQTLIMFLGQLVVIIVGAAKVGGLGHVWAVASQHGLISGIELDPDPFVRHTFWTLAFGGVFM 265
            |||:|..:|||..:.|..:......||..|:..|.|.|.:.....:|.|:||||.|::..||...
  Fly   197 TDVWQVAVMFLSLVAVAFLAIYYSNGLVAVFDDAEQGGRLMLANTNPSPYVRHTVWSVLIGGFSF 261

  Rat   266 MLSLYGVNQAQVQRYLSSHSEKAAVLSCY------AVFPCQQVALCMSCLIGLVMFAYYKKYSMS 324
            ..|:....|..||||:|..|.|.:..:.:      ::|    :|||  |.:||::|:.||.....
  Fly   262 WTSVNAGGQHMVQRYMSLPSLKKSRQASFIFTIGVSIF----IALC--CFMGLLLFSKYKDCDPR 320

  Rat   325 PQQEQAAPDQLVLYFVMDLLKDMPGLPGLFVACLFSGSLSTISSAFNSLATVTMEDLIQPWFP-Q 388
            ........|||:..||:..:..:.|:||||:|.:|...||::||.||:::.|.:||:::.:|. :
  Fly   321 SAGMILNDDQLLPLFVVQSVGHIYGMPGLFIAGIFGAGLSSLSSCFNTVSMVFLEDIVRGFFKME 385

  Rat   389 LTETRAIMLSRSLAFAYGLVCLGMAYVSSHLGSVLQAALSIFGMVGGPLLGLFCLGMFFPCANPL 453
            .:|.::.:|.::.....|::...:.::..||..:|....||..:..|...|:|.|||.||.||.:
  Fly   386 PSERQSTILIKTCIIFQGILAFLIVFLLQHLRGILSVCNSISSITAGTSFGVFTLGMLFPWANTI 450

  Rat   454 GAIVGLLTGLTMAFWIGIGSIVSRMSSAAASPPLNGSSSFLPSNL--TVATVTTLMPSTLSKPTG 516
            |..||.|:.:.:|.||..||.:     ||||..|  .|..||.::  .|..|      ||.:...
  Fly   451 GTAVGGLSSVLLAGWISFGSQI-----AAASGQL--KSGMLPVSVKECVGNV------TLPEDPW 502

  Rat   517 LQQ-----FYSLSYLWYSAHNSTTVIAVGLIVSLLTGGMRGRSLNPGTIYPVLPKLLALLPLSCQ 576
            :.|     .|.|||.|.|.....|.:.||.:|||:|.....::|:...|.||:.:.|        
  Fly   503 VDQDQVFPLYRLSYHWVSPIGVVTAVVVGALVSLITKPADIKTLHAELISPVIHRFL-------- 559

  Rat   577 KRLCWRSHN 585
            .|.|:|..|
  Fly   560 PRECFRGRN 568

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Slc5a6NP_570102.1 SLC5-6-like_sbd 23..548 CDD:382020 178/555 (32%)
CG31262NP_001138069.2 SLC5sbd_NIS-SMVT 9..522 CDD:271383 171/535 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 44 1.000 Domainoid score I11950
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D489472at33208
OrthoFinder 1 1.000 - - FOG0000151
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X112
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
76.920

Return to query results.
Submit another query.