DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Loxl3 and Loxl2

DIOPT Version :9

Sequence 1:NP_038614.2 Gene:Loxl3 / 16950 MGIID:1337004 Length:754 Species:Mus musculus
Sequence 2:NP_523806.2 Gene:Loxl2 / 37485 FlyBaseID:FBgn0034660 Length:511 Species:Drosophila melanogaster


Alignment Length:460 Identity:193/460 - (41%)
Similarity:264/460 - (57%) Gaps:41/460 - (8%)


- Green bases have known domain annotations that are detailed below.


Mouse   305 EARVRLKGGAHQGEGRVEVLKAGTWGTVCDRKWDLQAASVVCRELGFGTAREALSGARMGQGMGA 369
            |..:||.||.::.||.:|||..|.||.|||.:||...|.:|||:|||...|........|.....
  Fly    58 EGAIRLVGGDNEYEGNIEVLHNGKWGAVCDDEWDSTEADIVCRQLGFPGMRRYTRSGFFGPARRR 122

Mouse   370 IHLSEVRCSGQEPSLWRCPSKNITAEDCSHSQDAGVRC------------------NLPYTGVET 416
            ..:..:.|.|.|..|..|..:.....||...:.|||.|                  :||...:.:
  Fly   123 FWMDNLFCEGHEQELVDCHFEGWGENDCEPGEAAGVVCYPPENALIPMATPIIRDEDLPKYPIHS 187

Mouse   417 K----IRLSGGRSRYEGRVEVQI--GIPGHLRWGLICGDDWGTLEAMVACRQLGLGYANHGLQET 475
            :    :||.|||||.||||||.:  |     |||.:|.|.|..|||.|.|||||||||:...| |
  Fly   188 RSRLYVRLRGGRSRIEGRVEVSLDGG-----RWGSVCADGWSLLEANVVCRQLGLGYASEAFQ-T 246

Mouse   476 WYWDSGNVTEVVMSGVRCTGSELSLNQCAHHSSH---ITCKKTGTR-FTAGVICSETASDLLLHS 536
            .::...||:..|:||..|.|:|..|..|.||.:.   |:|.  |.| ..|.|||...|.||::..
  Fly   247 DFFGGFNVSRPVLSGSECYGNETELADCLHHDASQGIISCH--GNRQHVAAVICDYIAPDLVVDY 309

Mouse   537 ALVQETAYIEDRPLHMLYCAAEENCLASSA-----RSANWPYGHRRLLRFSSQIHNLGRADFRPK 596
            ..:::||::||||:.::.||.||||:|:.|     ...:|.|..||||:|::...|.|.|||||.
  Fly   310 LEIEQTAHLEDRPMLLMQCAMEENCVANEAYQIQRDDPHWRYRSRRLLKFTAAAINAGNADFRPF 374

Mouse   597 AGRHSWVWHECHGHYHSMDIFTHYDILTPNGTKVAEGHKASFCLEDTECQEDVSKRYECANFGEQ 661
            ..:..|.||.||.|:|||::|..:||....|.|||:||||||||||:.|...|:|:|.|||:|:|
  Fly   375 KEKSQWEWHMCHMHFHSMEVFATFDIFNLRGIKVAQGHKASFCLEDSNCLPGVAKKYNCANYGDQ 439

Mouse   662 GITVGCWDLYRHDIDCQWIDITDVKPGNYILQVVINPNFEVAESDFTNNAMKCNCKYDGHRIWVH 726
            ||::.|.|:|.:::||||:|:||:.||.|:|::.|||.|:|||.::.|||..|:..|..:...|.
  Fly   440 GISINCSDVYLYNLDCQWVDVTDLIPGTYVLKIAINPEFKVAEMNYDNNAAICDLIYTANFARVQ 504

Mouse   727 NCHIG 731
            ||.:|
  Fly   505 NCQLG 509

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Loxl3NP_038614.2 SR 46..145 CDD:214555
SRCR 54..146 CDD:278931
SR 170..282 CDD:214555
SRCR 187..282 CDD:278931
SR 308..408 CDD:214555 37/117 (32%)
SRCR 313..408 CDD:278931 34/112 (30%)
SR 418..526 CDD:214555 54/113 (48%)
SRCR 423..526 CDD:278931 51/108 (47%)
Lysyl-oxidase like 530..733 97/207 (47%)
Lysyl_oxidase 531..725 CDD:279521 93/198 (47%)
Loxl2NP_523806.2 SR 61..161 CDD:214555 36/99 (36%)
SRCR 66..160 CDD:278931 33/93 (35%)
SR 193..298 CDD:214555 53/112 (47%)
SRCR 198..298 CDD:278931 50/107 (47%)
Lysyl_oxidase 303..503 CDD:279521 93/199 (47%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 224 1.000 Domainoid score I2544
eggNOG 1 0.900 - - E1_28KG1
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 373 1.000 Inparanoid score I2084
Isobase 1 0.950 - 0 Normalized mean entropy S6743
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000389
OrthoInspector 1 1.000 - - otm43741
orthoMCL 1 0.900 - - OOG6_104333
Panther 1 1.100 - - LDO PTHR45817
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5813
SonicParanoid 1 1.000 - - X896
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1413.800

Return to query results.
Submit another query.