| Sequence 1: | NP_001002011.2 | Gene: | Lmna / 16905 | MGIID: | 96794 | Length: | 665 | Species: | Mus musculus |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | NP_001260974.1 | Gene: | LamC / 36615 | FlyBaseID: | FBgn0010397 | Length: | 640 | Species: | Drosophila melanogaster |
| Alignment Length: | 626 | Identity: | 220/626 - (35%) |
|---|---|---|---|
| Similarity: | 335/626 - (53%) | Gaps: | 80/626 - (12%) |
- Green bases have known domain annotations that are detailed below.
|
Mouse 1 METPSQRRATRS---GAQASS-----TPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENA 57
Mouse 58 GLRLRITESEEVVSREVSGIKAAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARNTK 122
Mouse 123 KEGDLLAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVAKLEAALGEAKKQLQDEM 187
Mouse 188 LRRVDAENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQELRAQH 252
Mouse 253 EDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQKQLAAKE 317
Mouse 318 AKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEG 382
Mouse 383 EEERL-------------------RLSPSPTSQRSRGRASSHSSQSQG--GGSVTKKRK--LESS 424
Mouse 425 ESR--SSFSQHARTSGRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIRRQNGDDPLMTYRFPPKF 487
Mouse 488 TLKAGQVVTIWASGAGATHSPPTDLVWKAQNTWGCGSSLRTALINSTGEEVAMRKLVRSLTMVED 552
Mouse 553 NEDDDEDGEELLHHHRGSHCSGSGDPAEYNLRSRTVLCGTC 593 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| Lmna | NP_001002011.2 | Interaction with MLIP. /evidence=ECO:0000250 | 1..130 | 62/136 (46%) | |
| Head | 1..33 | 15/39 (38%) | |||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1..25 | 10/31 (32%) | |||
| Filament | 30..386 | CDD:365827 | 143/355 (40%) | ||
| Coil 1A | 34..70 | 18/35 (51%) | |||
| Linker 1 | 71..80 | 4/8 (50%) | |||
| Coil 1B | 81..218 | 47/136 (35%) | |||
| Linker 2 | 219..242 | 6/22 (27%) | |||
| Coil 2 | 243..383 | 56/139 (40%) | |||
| Tail | 384..665 | 65/235 (28%) | |||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 384..442 | 21/82 (26%) | |||
| Nuclear localization signal. /evidence=ECO:0000255 | 417..422 | 2/6 (33%) | |||
| LTD | 437..541 | CDD:376421 | 36/103 (35%) | ||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 553..577 | 0/23 (0%) | |||
| LamC | NP_001260974.1 | Filament | 45..401 | CDD:278467 | 143/355 (40%) |
| ATP-synt_B | <67..>142 | CDD:304375 | 32/74 (43%) | ||
| MreC | <178..>224 | CDD:302802 | 19/45 (42%) | ||
| LTD | 473..574 | CDD:279300 | 37/110 (34%) |
| Tool | Simple Score | Weighted Score | Original Tool Information | |||
|---|---|---|---|---|---|---|
| BLAST Result | Score | Score Type | Cluster ID | |||
| Compara | 0 | 0.000 | Not matched by this tool. | |||
| Domainoid | 1 | 1.000 | 270 | 1.000 | Domainoid score | I1818 |
| eggNOG | 1 | 0.900 | - | - | E1_KOG0977 | |
| Hieranoid | 1 | 1.000 | - | - | ||
| Homologene | 0 | 0.000 | Not matched by this tool. | |||
| Inparanoid | 1 | 1.050 | 391 | 1.000 | Inparanoid score | I1969 |
| Isobase | 0 | 0.000 | Not matched by this tool. | |||
| OMA | 1 | 1.010 | - | - | QHG48052 | |
| OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
| OrthoFinder | 1 | 1.000 | - | - | FOG0001052 | |
| OrthoInspector | 1 | 1.000 | - | - | mtm8905 | |
| orthoMCL | 1 | 0.900 | - | - | OOG6_103212 | |
| Panther | 1 | 1.100 | - | - | O | PTHR45721 |
| Phylome | 1 | 0.910 | - | - | ||
| RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R2618 |
| SonicParanoid | 1 | 1.000 | - | - | X632 | |
| SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
| TreeFam | 1 | 0.960 | - | - | ||
| 13 | 12.860 | |||||