Sequence 1: | NP_001345522.1 | Gene: | Lifr / 16880 | MGIID: | 96788 | Length: | 1092 | Species: | Mus musculus |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001246162.1 | Gene: | Dscam1 / 35652 | FlyBaseID: | FBgn0033159 | Length: | 2038 | Species: | Drosophila melanogaster |
Alignment Length: | 1112 | Identity: | 219/1112 - (19%) |
---|---|---|---|
Similarity: | 363/1112 - (32%) | Gaps: | 318/1112 - (28%) |
- Green bases have known domain annotations that are detailed below.
Mouse 115 GFQSKFTLNEKDVSLIPET-----PEILDL--SADFFTS------SLLLKWN------DRGSALP 160
Mouse 161 HPSNATWEIKVLQNPRTEPVALVLLNTMLSGKDTVQHWN------WTSDLPLQCATHSVSIRWHI 219
Mouse 220 DSPHFSGYKEWSDWSPLKNISWIRNTETNVFPQDKVVLAGSNMTICCMS-----PTKVLSGQIGN 279
Mouse 280 T------LRPLIHLYGQTVAIHILNIPVSENSGTNIIFITDDDVYG--------TVVFAGYPPDV 330
Mouse 331 PQK-------------LSCETHDLKEIICSWNPGRITGLVGPRN-TEYTLFESISGKSAVFHRIE 381
Mouse 382 GLTNETYRLGVQMHPGQEIHNFTLTGRNPLGQAQSAVVINVTERVAPHDPTSLKVKDINSTVVTF 446
Mouse 447 SWYLP--GNFTKINLLCQIEICKANSKKEVRNATIRGAEDSTYHVAVDKLNPYTAYTFRVRCSSK 509
Mouse 510 TFWKWSRWSDEKRHLTTEATPSKGPDTWREWSSDGKNLIVYWKPLPINEANGKILSYNVSCSL-N 573
Mouse 574 EETQSVLEIFD------PQHRAEIQLSK--NDYIISVVARNSAGSSPPSKIASMEIPNDDITVEQ 630
Mouse 631 AVGLGNRIFLTWRHDPNMTCDYVIKWCNSSRSEPCLLDWRKVPSNSTETVIE--------SDQFQ 687
Mouse 688 PGVRYNF--------YLYGC---TNQGYQLLRSIIG-----------YVEELAPIVAPNFTVEDT 730
Mouse 731 SA-----DSILVKWDDIPVEELRGFLRGYLFYFQ-KGERDTPKTRSLEPHHSDIKLKNITDISQK 789
Mouse 790 TLRIADLQGKTSYHLVLRAYTHGGLGPEKSMFVVTKENSVGLIIAILIPVAVAVIVGVVTSILCY 854
Mouse 855 RKREWIKETFYPD---------IPNPE---NCKALQFQKSVCEGSNALKTLEMNPCTPNNVEVLE 907
Mouse 908 SRSIVPKI---EDTEIISPVAERPGERSEVDPENHVVVSYCPPIIEEEITNPAADEVGGASQVVY 969
Mouse 970 IDVQSMYQPQAKAEEEQDVDPV--VVAGYKPQM-RLPISPAVEDTAAEDEEGKTAGYRPQANVNT 1031
Mouse 1032 WNLVS-------------------PDSPRSTDSNNEVVSF--------GSPCSINSRQFLIPPKD 1069
Mouse 1070 EDSPKSN 1076 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Lifr | NP_001345522.1 | LIFR_N | 50..124 | CDD:375634 | 2/8 (25%) |
LIFR_D2 | 126..239 | CDD:375455 | 22/137 (16%) | ||
FN3 | 428..525 | CDD:238020 | 26/98 (27%) | ||
WSXWS motif | 514..518 | 1/3 (33%) | |||
FN3 | 547..613 | CDD:389787 | 23/74 (31%) | ||
FN3 | 724..816 | CDD:238020 | 21/97 (22%) | ||
Box 1 motif | 864..872 | 3/16 (19%) | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1009..1092 | 19/95 (20%) | |||
Dscam1 | NP_001246162.1 | Ig | 38..130 | CDD:299845 | |
IG | 57..133 | CDD:214652 | |||
IG_like | 267..343 | CDD:214653 | |||
Ig | 269..340 | CDD:143165 | |||
IG_like | 353..425 | CDD:214653 | |||
IGc2 | 361..413 | CDD:197706 | |||
I-set | 433..527 | CDD:254352 | |||
IGc2 | 446..517 | CDD:197706 | |||
I-set | 533..618 | CDD:254352 | 3/11 (27%) | ||
IGc2 | 544..607 | CDD:197706 | 219/1112 (20%) | ||
Ig | 641..714 | CDD:143165 | 12/76 (16%) | ||
IGc2 | 735..804 | CDD:197706 | 13/73 (18%) | ||
I-set | 819..914 | CDD:254352 | 23/109 (21%) | ||
Ig | 833..921 | CDD:299845 | 22/102 (22%) | ||
FN3 | 918..1011 | CDD:238020 | 26/98 (27%) | ||
FN3 | 1018..1116 | CDD:238020 | 26/103 (25%) | ||
FN3 | 1124..1217 | CDD:238020 | 18/98 (18%) | ||
FN3 | 1222..1312 | CDD:238020 | 25/109 (23%) | ||
Ig | 1339..1406 | CDD:299845 | 14/87 (16%) | ||
FN3 | 1409..1499 | CDD:238020 | 17/104 (16%) | ||
FN3 | 1504..1584 | CDD:238020 | 12/51 (24%) | ||
Dscam_C | 1890..2008 | CDD:289151 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
1 | 0.910 |