Sequence 1: | NP_038610.1 | Gene: | Lhcgr / 16867 | MGIID: | 96783 | Length: | 700 | Species: | Mus musculus |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_476702.1 | Gene: | rk / 34819 | FlyBaseID: | FBgn0003255 | Length: | 1360 | Species: | Drosophila melanogaster |
Alignment Length: | 750 | Identity: | 242/750 - (32%) |
---|---|---|---|
Similarity: | 366/750 - (48%) | Gaps: | 157/750 - (20%) |
- Green bases have known domain annotations that are detailed below.
Mouse 7 ALRQLLVLAMLVL-------------KQSQLHSPELSGSRCPEPCDCAPDGALRCPG----PRAG 54
Mouse 55 LARLSLTYLPVKVIPSQAFRGLNEVVKIEISQSDSLE---RIEANAFDNLLNLSEILIQNTKNLL 116
Mouse 117 YIEPGAFTNLPRLKYLSICNTGIRTLPDVS----------------KISSSEFNFILEICDNLY- 164
Mouse 165 ---ITTIPGNAFQGMNNESITLKLYGNGFEEVQSHAFNG-TTLISLELKENIYLEKMHSGTFQGA 225
Mouse 226 TGPSILDVSSTKLQALPSHGLESIQTLIATSSYSLKTLPSREKFTSLLVATLTYPSHCCAFRNLP 290
Mouse 291 -------KK------------EQNFSFSIF-----------ENFSKQCESTVREA-------NNE 318
Mouse 319 TLYS------------AIFEENELSGWDYDYDF------------CSPKTLQCTPEPDAFNPCED 359
Mouse 360 IMGYAFLRVLIWLINILAIFGNLTVLFVLLTSRYKLTVPRFLMCNLSFADFCMGLYLLLIASVDS 424
Mouse 425 QTKGQYYNHAIDWQTGSGCSAAGFFTVFASELSVYTLTVITLERWHTITYAVQLDQKLRLRHAIP 489
Mouse 490 IMLGGWIFSTLMATLPLVGVSSYMKVSICLPMDVES-TLSQVYILSILLLNAVAFVVICACYVRI 553
Mouse 554 YFAVQNPELTAPNKDTKIAKKMAILIFTDFTCMAPISFFAISAAFKVPLITVTNSKVLLVLFYPV 618
Mouse 619 NSCANPFLYAVFTKAFQRDFFLLLSRFGCCKHRAE 653 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Lhcgr | NP_038610.1 | LRR 1 | 52..75 | 6/22 (27%) | |
leucine-rich repeat | 55..78 | CDD:275380 | 7/22 (32%) | ||
LRR_5 | 66..204 | CDD:290045 | 41/161 (25%) | ||
leucine-rich repeat | 79..103 | CDD:275380 | 5/26 (19%) | ||
leucine-rich repeat | 104..128 | CDD:275380 | 3/23 (13%) | ||
LRR 2 | 126..150 | 9/39 (23%) | |||
leucine-rich repeat | 129..150 | CDD:275380 | 7/36 (19%) | ||
leucine-rich repeat | 155..178 | CDD:275380 | 8/26 (31%) | ||
LRR 3 | 176..200 | 6/23 (26%) | |||
leucine-rich repeat | 180..202 | CDD:275380 | 7/22 (32%) | ||
leucine-rich repeat | 203..227 | CDD:275380 | 6/23 (26%) | ||
LRR 4 | 225..248 | 4/22 (18%) | |||
leucine-rich repeat | 228..248 | CDD:275380 | 4/19 (21%) | ||
7tm_1 | 380..627 | CDD:278431 | 119/247 (48%) | ||
rk | NP_476702.1 | leucine-rich repeat | 158..179 | CDD:275380 | |
LRR_RI | 180..>383 | CDD:238064 | 11/52 (21%) | ||
leucine-rich repeat | 183..204 | CDD:275380 | |||
LRR_8 | 203..263 | CDD:290566 | |||
leucine-rich repeat | 205..228 | CDD:275380 | |||
leucine-rich repeat | 229..252 | CDD:275380 | |||
LRR_8 | 252..311 | CDD:290566 | |||
leucine-rich repeat | 253..276 | CDD:275380 | |||
leucine-rich repeat | 277..300 | CDD:275380 | |||
LRR_8 | 299..359 | CDD:290566 | 6/16 (38%) | ||
leucine-rich repeat | 301..324 | CDD:275380 | |||
leucine-rich repeat | 325..348 | CDD:275380 | 3/5 (60%) | ||
LRR_RI | 327..567 | CDD:238064 | 61/244 (25%) | ||
leucine-rich repeat | 349..371 | CDD:275380 | 4/21 (19%) | ||
LRR_8 | 370..425 | CDD:290566 | 16/67 (24%) | ||
leucine-rich repeat | 372..393 | CDD:275380 | 5/32 (16%) | ||
leucine-rich repeat | 394..415 | CDD:275380 | 6/20 (30%) | ||
leucine-rich repeat | 418..486 | CDD:275380 | 16/73 (22%) | ||
leucine-rich repeat | 441..464 | CDD:275378 | 4/28 (14%) | ||
LRR_8 | 487..545 | CDD:290566 | 16/58 (28%) | ||
leucine-rich repeat | 487..510 | CDD:275380 | 4/22 (18%) | ||
leucine-rich repeat | 511..534 | CDD:275380 | 8/22 (36%) | ||
LRR_8 | 533..589 | CDD:290566 | 19/81 (23%) | ||
leucine-rich repeat | 535..558 | CDD:275380 | 7/23 (30%) | ||
leucine-rich repeat | 559..580 | CDD:275380 | 10/45 (22%) | ||
7tm_4 | 764..>892 | CDD:304433 | 66/127 (52%) | ||
7tm_1 | 770..1017 | CDD:278431 | 119/247 (48%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG2087 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.810 |