DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lhcgr and rk

DIOPT Version :9

Sequence 1:NP_038610.1 Gene:Lhcgr / 16867 MGIID:96783 Length:700 Species:Mus musculus
Sequence 2:NP_476702.1 Gene:rk / 34819 FlyBaseID:FBgn0003255 Length:1360 Species:Drosophila melanogaster


Alignment Length:750 Identity:242/750 - (32%)
Similarity:366/750 - (48%) Gaps:157/750 - (20%)


- Green bases have known domain annotations that are detailed below.


Mouse     7 ALRQLLVLAMLVL-------------KQSQLHSPELSGSRCPEPCDCAPDGALRCPG----PRAG 54
            ||:.|..|.:|.|             |.|||....::.:|            ||...    ||: 
  Fly   342 ALKNLTALKVLELDDNLISSLPEGLSKLSQLQELSITSNR------------LRWINDTELPRS- 393

Mouse    55 LARLSLTYLPVKVIPSQAFRGLNEVVKIEISQSDSLE---RIEANAFDNLLNLSEILIQNTKNLL 116
            :..|.:...|:..|...||||::::.|:.:|...:|.   .:||.....:|.|....||.     
  Fly   394 MQMLDMRANPLSTISPGAFRGMSKLRKLILSDVRTLRSFPELEACHALEILKLDRAGIQE----- 453

Mouse   117 YIEPGAFTNLPRLKYLSICNTGIRTLPDVS----------------KISSSEFNFILEICDNLY- 164
             :........||||.|.:....::.:|::|                ||....||.:.::.|.|. 
  Fly   454 -VPANLCRQTPRLKSLELKTNSLKRIPNLSSCRDLRLLDLSSNQIEKIQGKPFNGLKQLNDLLLS 517

Mouse   165 ---ITTIPGNAFQGMNNESITLKLYGNGFEEVQSHAFNG-TTLISLELKENIYLEKMHSGTFQGA 225
               |..:|.:||||:....: |.|.||....:...||:| |.|..|.|..||:.|          
  Fly   518 YNRIKALPQDAFQGIPKLQL-LDLEGNEISYIHKEAFSGFTALEDLNLGNNIFPE---------- 571

Mouse   226 TGPSILDVSSTKLQALPSHGLESIQTLIATSSYSLKTLPSREKFTSLLVATLTYPSHCCAFRNLP 290
                           ||..||.::..|...::..|:..|..:.|..:....|:|..|||||  ||
  Fly   572 ---------------LPESGLRALLHLKTFNNPKLREFPPPDTFPRIQTLILSYAYHCCAF--LP 619

Mouse   291 -------KK------------EQNFSFSIF-----------ENFSKQCESTVREA-------NNE 318
                   ||            :..|..:::           .|.|||..:::.:.       |.|
  Fly   620 LVAMSSQKKTSQVQEAVLFPSDAEFDMTLWNNSMMNIWPQMHNLSKQLGASMHDPWETAINFNEE 684

Mouse   319 TLYS------------AIFEENELSGWDYDYDF------------CSPKTLQCTPEPDAFNPCED 359
            .|.:            ..|||:::||....|.|            ..|.::||.|.|..|.||.|
  Fly   685 QLQTQTGGQIATSYMEEYFEEHDVSGPATGYGFGTGLFSGMSTEDFQPGSVQCLPMPGPFLPCAD 749

Mouse   360 IMGYAFLRVLIWLINILAIFGNLTVLFVLLTSRYKLTVPRFLMCNLSFADFCMGLYLLLIASVDS 424
            :..:..||..:|::.:|::.||.||:||||.||.|:.|||||:|||:.|||.||:||.::|.||:
  Fly   750 LFDWWTLRCGVWVVFLLSLLGNGTVVFVLLCSRSKMDVPRFLVCNLAAADFFMGIYLGILAIVDA 814

Mouse   425 QTKGQYYNHAIDWQTGSGCSAAGFFTVFASELSVYTLTVITLERWHTITYAVQLDQKLRLRHAIP 489
            .|.|::...||.||....|..:||..|.:||||||||.||||||.:.||:|:.|:::|.|:.|..
  Fly   815 ATLGEFRMFAIPWQMSVLCQLSGFLAVLSSELSVYTLAVITLERNYAITHAIHLNKRLSLKQAGY 879

Mouse   490 IMLGGWIFSTLMATLPLVGVSSYMKVSICLPMDVES-TLSQVYILSILLLNAVAFVVICACYVRI 553
            ||..||:|:.:||.:||||||.|.|.::|||.:..: ..|..|::|::.:|..||:.:..||:::
  Fly   880 IMSVGWVFALIMALMPLVGVSDYRKFAVCLPFETTTGPASLTYVISLMFINGCAFLTLMGCYLKM 944

Mouse   554 YFAVQNPELTAPNKDTKIAKKMAILIFTDFTCMAPISFFAISAAFKVPLITVTNSKVLLVLFYPV 618
            |:|::..:....| |::|||:||:|:||||.|.:||:||:|:|.|.:.||::..:|:..|...|:
  Fly   945 YWAIRGSQAWNTN-DSRIAKRMALLVFTDFLCWSPIAFFSITAIFGLQLISLEQAKIFTVFVLPL 1008

Mouse   619 NSCANPFLYAVFTKAFQRDFFLLLSRFGCCKHRAE 653
            |||.||||||:.||.|::|...|      |||..|
  Fly  1009 NSCCNPFLYAIMTKQFKKDCVTL------CKHFEE 1037

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LhcgrNP_038610.1 LRR 1 52..75 6/22 (27%)
leucine-rich repeat 55..78 CDD:275380 7/22 (32%)
LRR_5 66..204 CDD:290045 41/161 (25%)
leucine-rich repeat 79..103 CDD:275380 5/26 (19%)
leucine-rich repeat 104..128 CDD:275380 3/23 (13%)
LRR 2 126..150 9/39 (23%)
leucine-rich repeat 129..150 CDD:275380 7/36 (19%)
leucine-rich repeat 155..178 CDD:275380 8/26 (31%)
LRR 3 176..200 6/23 (26%)
leucine-rich repeat 180..202 CDD:275380 7/22 (32%)
leucine-rich repeat 203..227 CDD:275380 6/23 (26%)
LRR 4 225..248 4/22 (18%)
leucine-rich repeat 228..248 CDD:275380 4/19 (21%)
7tm_1 380..627 CDD:278431 119/247 (48%)
rkNP_476702.1 leucine-rich repeat 158..179 CDD:275380
LRR_RI 180..>383 CDD:238064 11/52 (21%)
leucine-rich repeat 183..204 CDD:275380
LRR_8 203..263 CDD:290566
leucine-rich repeat 205..228 CDD:275380
leucine-rich repeat 229..252 CDD:275380
LRR_8 252..311 CDD:290566
leucine-rich repeat 253..276 CDD:275380
leucine-rich repeat 277..300 CDD:275380
LRR_8 299..359 CDD:290566 6/16 (38%)
leucine-rich repeat 301..324 CDD:275380
leucine-rich repeat 325..348 CDD:275380 3/5 (60%)
LRR_RI 327..567 CDD:238064 61/244 (25%)
leucine-rich repeat 349..371 CDD:275380 4/21 (19%)
LRR_8 370..425 CDD:290566 16/67 (24%)
leucine-rich repeat 372..393 CDD:275380 5/32 (16%)
leucine-rich repeat 394..415 CDD:275380 6/20 (30%)
leucine-rich repeat 418..486 CDD:275380 16/73 (22%)
leucine-rich repeat 441..464 CDD:275378 4/28 (14%)
LRR_8 487..545 CDD:290566 16/58 (28%)
leucine-rich repeat 487..510 CDD:275380 4/22 (18%)
leucine-rich repeat 511..534 CDD:275380 8/22 (36%)
LRR_8 533..589 CDD:290566 19/81 (23%)
leucine-rich repeat 535..558 CDD:275380 7/23 (30%)
leucine-rich repeat 559..580 CDD:275380 10/45 (22%)
7tm_4 764..>892 CDD:304433 66/127 (52%)
7tm_1 770..1017 CDD:278431 119/247 (48%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2087
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.