DRSC/TRiP Functional Genomics Resources

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Protein Alignment RNF133 and rnf128a

DIOPT Version :9

Sequence 1:NP_631914.1 Gene:RNF133 / 168433 HGNCID:21154 Length:376 Species:Homo sapiens
Sequence 2:NP_997780.1 Gene:rnf128a / 322325 ZFINID:ZDB-GENE-030131-1044 Length:389 Species:Danio rerio


Alignment Length:395 Identity:154/395 - (38%)
Similarity:225/395 - (56%) Gaps:40/395 - (10%)


- Green bases have known domain annotations that are detailed below.


Human     6 VGTWRNNTASSWLMKFSVLWLVSQNCCRASVVWMAYMNISF--HVGNHVLSELGETGVFGRSSTL 68
            :|...:....|||:..|||.:.|.....||.:..||:|||:  ...|.......|.|::|:.|..
Zfish     1 MGPLASRDVFSWLLLASVLQVSSVRLAEASYLCTAYLNISYTNPENNRSTWFQEEMGLYGQDSPK 65

Human    69 KRVAGVIV---PPEGKIQNACNPNTIFSRSKYSETWLALIERG-GCTFTQKIKVATEKGASGVII 129
            ..|.|.:.   |..|     |:.:|.:.|...|:.|:|||:|| |||||:||.:|...||:..||
Zfish    66 AYVKGNVYLASPTYG-----CDDDTFYGRPNGSKGWIALIQRGNGCTFTEKINIAAMNGAAAAII 125

Human   130 YNVPGTGNQVFPMFHQAFEDVVVVMIGNLKGTEIFHLIKKGVLITAVVEVGRKHIIWMNHYLV-- 192
            :|..|:.|:|..|.|.. ..:|.:||||.:|.|:..|:.:||.:...:|||::|..||:||.|  
Zfish   126 FNDFGSENRVIQMSHPG-TTIVAIMIGNYRGMELVQLLDQGVPVAIAIEVGKQHGPWMSHYSVFF 189

Human   193 ---SFVIVTTATLAYFIFYHIHRLCLARIQNRRWQRLTTDLQNTFGQLQLRVVKEGDEEINPNGD 254
               ||.|||.||:.|||||...||...|.|||..::|..:.:...||||:|.:::||:||.|:.|
Zfish   190 VSISFFIVTAATVGYFIFYSARRLNSLRQQNRSQKKLKAEAKKAIGQLQVRTLRQGDQEIGPDAD 254

Human   255 SCVICFERYKPNDIVRILTCKHFFHKNCIDPWILPHGTCPICKCDILKVLGIQVVVENGTEPLQV 319
            :|.:|.:.||..|::.||||.|||||:||:||:|.|.|||:|||||||.||:::.||   |..|:
Zfish   255 ACAVCIDSYKAGDVLSILTCNHFFHKSCIEPWLLEHRTCPMCKCDILKALGVELDVE---EQPQI 316

Human   320 LMSNELPETLSPSEE-------ETNNEVSPAGTSDKVIHVEEN---PTSQNNDIQ--PH----SV 368
            .:.:..|  .|.||:       .|::|.:.:|.:.  :|..|:   |...:|.:|  ||    :.
Zfish   317 SVPDFRP--FSTSEDLHSETASHTHSETASSGYAS--MHGNEHLAPPEGTHNGVQEEPHYDNLAF 377

Human   369 VEDVH 373
            ..|||
Zfish   378 ESDVH 382

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RNF133NP_631914.1 PA_GRAIL_like 43..177 CDD:239037 50/139 (36%)
RING_Ubox 254..302 CDD:327409 29/47 (62%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 327..376 16/63 (25%)
rnf128aNP_997780.1 PA_GRAIL_like 38..172 CDD:239037 50/139 (36%)
zf-RING_2 256..297 CDD:290367 23/40 (58%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 74 1.000 Domainoid score I30986
eggNOG 1 0.900 - - E1_KOG4628
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
NCBI 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1487241at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR22765
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X295
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
76.880

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