DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lef1 and pan

DIOPT Version :9

Sequence 1:NP_001365988.1 Gene:Lef1 / 16842 MGIID:96770 Length:412 Species:Mus musculus
Sequence 2:NP_726528.2 Gene:pan / 43769 FlyBaseID:FBgn0085432 Length:1192 Species:Drosophila melanogaster


Alignment Length:447 Identity:147/447 - (32%)
Similarity:200/447 - (44%) Gaps:91/447 - (20%)


- Green bases have known domain annotations that are detailed below.


Mouse    30 PQK-EKIFAEISHPEEEGD--LADIK-SSLVNESEII----PASNGHEVVRQAPSSQEPYHDKAR 86
            ||| ..:.::|...|.|.|  |...| .:||...:||    .:.|.|: ...|.:..|.|.|..:
  Fly   384 PQKTNAVHSKIPDVESESDFFLTSAKPKTLVEIEDIILQLASSVNMHQ-SSSASTPHESYSDSVK 447

Mouse    87 EHPDEGKHPDGGLYNKGPS----------------------------YSSYS-------GYIMMP 116
            ...:|.        |..|:                            |:|.|       ..::..
  Fly   448 SDCEES--------NSAPTCIWHSTRQTFRHKKDVEPCSTAAEIILEYASLSSSSNIETSRLLTS 504

Mouse   117 NMNSDPYMSNGSLSPPIPRTSN-----------KVPVVQPSHAVHPLTPLITYSDEHFSPGSHPS 170
            ..|......|.:::..:|...|           ..|::.|..:..|.|| .|.|:...|.|....
  Fly   505 ASNLTDVTENYNVTTQLPIVFNYNRESSAESIVTDPLLVPEFSTAPSTP-STGSNSGCSTGMVSG 568

Mouse   171 HIPSDVN-SKQGMSRHPPAPEIPTFYPLSPGG------VGQITPPIGWQGQPV----YPITGGFR 224
            ......| .||.::||.......:|...:..|      ..|:......:..|.    :.||....
  Fly   569 IFGLSQNRRKQRLARHIETLTTNSFKSNAIRGNVDNEITNQLKTSPSIRALPTENVSHLITKTLS 633

Mouse   225 QPYPSSLSGDTSMSR-FSHHM--IPGPPGPHTTGIPHPAIVTP---QVKQEHPHTDSDLMHV-KP 282
            ....|..:.:.|::. |...:  :.|..|...|.| .|.|..|   .:..:..|.:.:..|. ..
  Fly   634 SANASLTAQELSITNLFKERLCALQGNAGSMKTEI-FPMIDAPYDLSIGSKTKHMNLEAKHTSNA 697

Mouse   283 QHEQRKE--QEPKRPHIKKPLNAFMLYMKEMRANVVAECTLKESAAINQILGRRWHALSREEQAK 345
            |..:.||  .:.|:|||||||||||||||||||.||||||||||||||||||||||.||||||:|
  Fly   698 QSNESKETTNDKKKPHIKKPLNAFMLYMKEMRAKVVAECTLKESAAINQILGRRWHELSREEQSK 762

Mouse   346 YYELARKERQLHMQLYPGWSARDNYG---KKKKRKREKLQESTSGGKRSSFPTCKAK 399
            |||.||:||||||:||||||||||||   ||||||::: ..:.|||  ::...|:|:
  Fly   763 YYEKARQERQLHMELYPGWSARDNYGYVSKKKKRKKDR-STTDSGG--NNMKKCRAR 816

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lef1NP_001365988.1 CTNNB1_binding 1..211 CDD:400583 46/241 (19%)
CTNNB1-binding 1..60 11/33 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 59..102 9/46 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 164..191 7/27 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 266..296 6/32 (19%)
SOX-TCF_HMG-box 296..367 CDD:238684 64/70 (91%)
panNP_726528.2 SOX-TCF_HMG-box 713..784 CDD:238684 64/70 (91%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 134 1.000 Domainoid score I4984
eggNOG 1 0.900 - - E1_KOG3248
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000839
OrthoInspector 1 1.000 - - otm57818
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10373
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2732
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
87.900

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