DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lef1 and Sox15

DIOPT Version :9

Sequence 1:NP_001365988.1 Gene:Lef1 / 16842 MGIID:96770 Length:412 Species:Mus musculus
Sequence 2:NP_523739.2 Gene:Sox15 / 36575 FlyBaseID:FBgn0005613 Length:784 Species:Drosophila melanogaster


Alignment Length:364 Identity:83/364 - (22%)
Similarity:146/364 - (40%) Gaps:96/364 - (26%)


- Green bases have known domain annotations that are detailed below.


Mouse    78 QEPYH----DKAREHPDEGKHPDGGLYNKGPSYSSYSGYI----MMPNMNSDP---YMSNGS--L 129
            :.|:|    ..::::|...:.|:.. ::.|..|..:.||:    :|...|||.   ::..||  .
  Fly     8 EHPHHLLTNYNSKKYPHVSRTPEYS-HSTGSDYPEHGGYLTDGRLMHESNSDAGIYHVRQGSEHS 71

Mouse   130 SPPIPRTSNKVPVVQPSHAVHPLTPLITYSDEHFSPGSHPSHIPSDVNSKQGMSRHPPAPEIPTF 194
            ||     |...|.:|.|          .|.:||.:.....:|..|          |.|.|.:.:.
  Fly    72 SP-----SLHSPAIQSS----------GYENEHLNEAVLAAHSHS----------HSPMPMVSSA 111

Mouse   195 YPLSPGGVGQITPPIGWQGQPV---YPITGGFRQPYPSSLSGDTSMSRFSHH----MIPGPPGPH 252
            |      ||..|.    .|..:   .|:.||         .|::.:::|..|    |:.|..|..
  Fly   112 Y------VGGGTA----SGSLINSNIPLLGG---------GGNSVLNKFLSHPHAGMVGGGTGQM 157

Mouse   253 TTGIPHPAIVTPQV----------------KQEHPHTDSDLMHVKPQHEQRKEQEPKRPHIKKPL 301
            .....|..|....:                .:.|....:||.: :|...|.|..:..|  |::|:
  Fly   158 EDCTSHSPIEAASMWSYDYKGDLCAPNCGYLERHKPLPADLKY-RPGGTQSKSAKESR--IRRPM 219

Mouse   302 NAFMLYMKEMRANVVAECTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSA 366
            ||||::.|..|..:..|.....:|.::::||::|.:|:.:::..|.|.|.:.|.:||..:|.:..
  Fly   220 NAFMVWAKIERKKLADENPDLHNADLSKMLGKKWRSLTPQDRRPYVEEAERLRVIHMTEHPNYKY 284

Mouse   367 RDNYGKKKKRKREKLQESTSGGKRSSFPTCKAKAATPGP 405
            |     .::||:.||:....|||..|       .::|.|
  Fly   285 R-----PRRRKQSKLRAMQPGGKEQS-------ESSPNP 311

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lef1NP_001365988.1 CTNNB1_binding 1..211 CDD:400583 32/145 (22%)
CTNNB1-binding 1..60
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 59..102 4/27 (15%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 164..191 5/26 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 266..296 7/45 (16%)
SOX-TCF_HMG-box 296..367 CDD:238684 21/70 (30%)
Sox15NP_523739.2 SOX-TCF_HMG-box 214..285 CDD:238684 22/72 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

Return to query results.
Submit another query.