DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ldb1 and Chi

DIOPT Version :9

Sequence 1:XP_006526786.3 Gene:Ldb1 / 16825 MGIID:894762 Length:695 Species:Mus musculus
Sequence 2:NP_726403.2 Gene:Chi / 37837 FlyBaseID:FBgn0013764 Length:596 Species:Drosophila melanogaster


Alignment Length:557 Identity:269/557 - (48%)
Similarity:343/557 - (61%) Gaps:66/557 - (11%)


- Green bases have known domain annotations that are detailed below.


Mouse   173 TNGSEREGGGGEGGGSAQTRTRTRAHTD-------THSGDAHPRVHT-------QRQLAFLPGFL 223
            |.|..|.   |...|:..|   ::|:.|       :..|...|..::       ..|..|..|.|
  Fly    17 TTGMNRR---GLNAGNTMT---SQANIDDGSWKAVSEGGSMLPASNSAVLNPDGSNQSGFAQGGL 75

Mouse   224 PVCSAPDRPLAAGRGGP---------HRAEAGPGRRRGHRGPRAAAAAHARPVPAR---GGHRDS 276
            |..||.:....||:..|         :..:.|....:....|..:.::...||.|:   |.:..|
  Fly    76 PYNSAGNPYPPAGQSSPAGNQSIVFQNSNQPGSNTPQYTSSPAPSGSSTPGPVGAQNIPGNYPQS 140

Mouse   277 A-------------GPPAAGDVKMS--VGCACPGCSSKSFKLYSPKEPPNGNAFPPFHPGTMLDR 326
            |             |.|::|..:.|  .....|..|.::....||.....|..|.|..|.:....
  Fly   141 ATAGNFNGPVGGPFGSPSSGLGQFSRPASSGTPFNSGQAGHFSSPTVFSVGGQFNPMPPASPFGH 205

Mouse   327 DVGPTPMYPPTYLE---PGIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDA 388
            ......|..|..:|   .|..||..|.:.|::|:||||||||...||.||.|||:||||||||||
  Fly   206 GGNHPMMGGPQQMERIDQGFRRHNSYFSHTEHRVFELNKRLQQRNEESDNCWWDSFTTEFFEDDA 270

Mouse   389 MLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGGATELYYVLKHPKEAFHSNFVSLDCDQGSMVTQ 453
            .|||.|||||||||||||||||||:||||:|||.::||:.|||.||:||:..::|||||.:::||
  Fly   271 RLTILFCLEDGPKRYTIGRTLIPRFFRSIYEGGVSDLYFQLKHAKESFHNTSITLDCDQCTVITQ 335

Mouse   454 HGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMH-AQDPQMLDQLSKNIT 517
            ||||.||:||.:.||.||||:||.||||:||.:|:.||||||||::... ..||.:|||::||||
  Fly   336 HGKPFFTKVCADARLILEFMYDDYMRIKSWHMTIKGHRELIPRSVIGTSLPPDPMLLDQITKNIT 400

Mouse   518 RCGLSNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPARQQ-PSK 581
            |.|::||||||||||||||||||||||||.|:|||||||||.||||||||||||.:...|: |:|
  Fly   401 RAGITNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKKDPQRPPNK 465

Mouse   582 RRKRKMSGGSTMSSGGGNTNNS---NSKKKSPAS-TFALSSQDVMVVGEPTLMGGEFGDEDERLI 642
            |||||.|     :|||||.:|:   .::|:||:. :|:||||||||||||||||||||:||||||
  Fly   466 RRKRKGS-----NSGGGNNSNTPPVTNQKRSPSGPSFSLSSQDVMVVGEPTLMGGEFGEEDERLI 525

Mouse   643 TRLENTQFDAANGI--DDEDSFN--NSPALGANSPWN 675
            |||||||:|..|.:  |:...|.  :||..|:| ||:
  Fly   526 TRLENTQYDGTNAVEHDNHTGFGHADSPISGSN-PWS 561

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ldb1XP_006526786.3 LIM_bind 356..557 CDD:366819 144/201 (72%)
LID 620..648 CDD:375427 26/27 (96%)
ChiNP_726403.2 LIM_bind 238..440 CDD:280051 144/201 (72%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167836369
Domainoid 1 1.000 241 1.000 Domainoid score I2236
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 455 1.000 Inparanoid score I1580
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002757
OrthoInspector 1 1.000 - - otm44085
orthoMCL 1 0.900 - - OOG6_105360
Panther 1 1.100 - - O PTHR10378
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3240
SonicParanoid 1 1.000 - - X1842
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1211.920

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