| Sequence 1: | NP_001304282.1 | Gene: | Lamp1 / 16783 | MGIID: | 96745 | Length: | 407 | Species: | Mus musculus |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | NP_610111.3 | Gene: | Lamp1 / 35411 | FlyBaseID: | FBgn0032949 | Length: | 318 | Species: | Drosophila melanogaster |
| Alignment Length: | 292 | Identity: | 80/292 - (27%) |
|---|---|---|---|
| Similarity: | 130/292 - (44%) | Gaps: | 54/292 - (18%) |
- Green bases have known domain annotations that are detailed below.
|
Mouse 159 KNVTVVLRDATIQAYLSSGNFSKEETHCTQDGP--------------SPTTGPPSPSPPLVPT-- 207
Mouse 208 ------NPTVSKYNVTGNNGTCLLASMALQLNITYLKKDNKTVTRAFNISPN-DTSSGSCG---- 261
Mouse 262 --INLVTLKVENKNRALELQFGMNASSSLFFLQGVRLNMTL-----PDALV-PTFSISNHSLKAL 318
Mouse 319 QATVGNSYKCNTEEHIFVSKMLS-------LNVFSVQVQAFKVDSDRFGSV-EECVQDGNNMLIP 375
Mouse 376 IAVGGALAGLVLIVLIAYLIGRKRSHA-GYQT 406 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| Lamp1 | NP_001304282.1 | First lumenal domain | 26..189 | 8/29 (28%) | |
| Lamp | 107..407 | CDD:279622 | 80/292 (27%) | ||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 181..208 | 9/48 (19%) | |||
| Hinge | 190..219 | 9/50 (18%) | |||
| Second lumenal domain | 220..371 | 43/171 (25%) | |||
| TM_EGFR-like | 372..401 | CDD:213052 | 17/28 (61%) | ||
| Lamp1 | NP_610111.3 | Lamp | <77..318 | CDD:279622 | 67/237 (28%) |
| Tool | Simple Score | Weighted Score | Original Tool Information | |||
|---|---|---|---|---|---|---|
| BLAST Result | Score | Score Type | Cluster ID | |||
| Compara | 0 | 0.000 | Not matched by this tool. | |||
| Domainoid | 1 | 1.000 | 42 | 1.000 | Domainoid score | I12375 |
| eggNOG | 1 | 0.900 | - | - | E1_KOG4818 | |
| Hieranoid | 1 | 1.000 | - | - | ||
| Homologene | 0 | 0.000 | Not matched by this tool. | |||
| Inparanoid | 1 | 1.050 | 79 | 1.000 | Inparanoid score | I5206 |
| Isobase | 0 | 0.000 | Not matched by this tool. | |||
| OMA | 0 | 0.000 | Not matched by this tool. | |||
| OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
| OrthoFinder | 1 | 1.000 | - | - | FOG0002671 | |
| OrthoInspector | 1 | 1.000 | - | - | otm44279 | |
| orthoMCL | 1 | 0.900 | - | - | OOG6_104018 | |
| Panther | 1 | 1.100 | - | - | O | PTHR11506 |
| Phylome | 1 | 0.910 | - | - | ||
| RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R4256 |
| SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
| SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
| TreeFam | 1 | 0.960 | - | - | ||
| 11 | 10.850 | |||||