DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lama1 and NetA

DIOPT Version :10

Sequence 1:NP_032506.2 Gene:Lama1 / 16772 MGIID:99892 Length:3083 Species:Mus musculus
Sequence 2:NP_511154.3 Gene:NetA / 32398 FlyBaseID:FBgn0015773 Length:726 Species:Drosophila melanogaster


Alignment Length:554 Identity:158/554 - (28%)
Similarity:234/554 - (42%) Gaps:122/554 - (22%)


- Green bases have known domain annotations that are detailed below.


Mouse    25 QQRGLFPAILNLATNAHISANATCGEKGPEMFCKLVEHVPGRPVRHAQCRVCDGNSTNPRERHPI 89
            :.|...|..:|.|.:|.:.|::|||..|.:.:|:..:|       ...|..||  .|:|....|.
  Fly    46 EPRACIPDFVNAAYDAPVVASSTCGSSGAQRYCEYQDH-------ERSCHTCD--MTDPLRSFPA 101

Mouse    90 SHAID--GTNN---WWQSPSIQNGREYHWVTVTLDLRQVFQVAYIIIK-AANAPRPGNWILERSV 148
            ....|  .:||   |...|...:|..   ||:||.|.:.|::.|:|:: ..:||||.:.::.:|.
  Fly   102 RSLTDLNNSNNVTCWRSEPVTGSGDN---VTLTLSLGKKFELTYVILQLCPHAPRPDSMVIYKST 163

Mouse   149 D-GVKFKPWQYYAVSDTECLTRYKITPRRGPPTYRADNEVICTSYYSKLVPLEHGEIHTSLINGR 212
            | |:.::|:|:::   ::| .|....|.|.......::|..|:.....||    ..|..|.:.||
  Fly   164 DHGLSWQPFQFFS---SQC-RRLFGRPARQSTGRHNEHEARCSDVTRPLV----SRIAFSTLEGR 220

Mouse   213 PSAD--DPSPQLLEFTSARYIRL---RLQRIRTLNADLMTLSHRDLRDLDPIVTRRY-------- 264
            ||:.  |.||.|.::.:|..||:   ||||     .|...|...:......:.:.:|        
  Fly   221 PSSRDLDSSPVLQDWVTATDIRVVFHRLQR-----PDPQALLSLEAGGATDLASGKYSVPLANGP 280

Mouse   265 --------------------YYSIKDISVGGMCICYGHASSCPWDEEAKQLQCQCEHNTCGESCD 309
                                :|:|.|.||||.|.|.||||.|..|... ||.|:|.|||.|..|:
  Fly   281 AGNNIEANLGGDVATSGSGLHYAISDFSVGGRCKCNGHASKCSTDASG-QLNCECSHNTAGRDCE 344

Mouse   310 RCCPGYHQQPWRPGTISSGNECEECNCHNKAKDCYYDSSVAKERRSLNTAGQYSGGGVCVNCSQN 374
            ||.|.:..:||...|....|||:||||:..|:.|.::..:.:       ..|...||||.||..:
  Fly   345 RCKPFHFDRPWARATAKEANECKECNCNKHARQCRFNMEIFR-------LSQGVSGGVCQNCRHS 402

Mouse   375 TTGINCETCIDQYYRPHKVSPYDDHPCRPCNCDPVGSLSSVCIKDDRHADLANGKWPGQCPCRKG 439
            |||.||..|.:.:||...........|:.|:|.|:||...:|           ....|||||:.|
  Fly   403 TTGRNCHQCKEGFYRDATKPLTHRKVCKACDCHPIGSSGKIC-----------NSTSGQCPCKDG 456

Mouse   440 YAGDKCDRCQFGYRGFPNCI-PC-----------DCRTVGSLNEDPCIEPCLCKKNVEGKNCDR- 491
            ..|..|:||..||:...:.| ||           |.:......::|...|        |...|| 
  Fly   457 VTGLTCNRCARGYQQSRSHIAPCIKQPPRMINMLDTQNTAPEPDEPESSP--------GSGGDRN 513

Mouse   492 ------CKPGFYNLKERNPEGCSECFCFGVSGVC 519
                  .:..:|     ..||..||      |.|
  Fly   514 GAAGMAAQSQYY-----RTEGGREC------GKC 536

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lama1NP_032506.2 LamNT 25..275 CDD:214532 74/289 (26%)
EGF_Lam 277..324 CDD:238012 22/46 (48%)
Laminin_EGF 404..463 CDD:395007 21/70 (30%)
Laminin_EGF 461..507 CDD:395007 9/63 (14%)
Laminin_B 575..714 CDD:459652
EGF_Lam <715..739 CDD:214543
EGF_Lam 748..796 CDD:238012
Laminin_EGF 798..853 CDD:395007
EGF_Lam 855..907 CDD:238012
Laminin_EGF 909..955 CDD:395007
EGF_Lam 958..1002 CDD:214543
EGF_Lam 1004..1049 CDD:238012
Laminin_EGF 1051..1099 CDD:395007
Laminin_EGF 1097..1154 CDD:395007
Cell attachment site 1147..1149
Laminin_B 1225..1367 CDD:459652
Laminin_EGF 1410..1456 CDD:395007
Laminin_EGF 1459..1513 CDD:395007
EGF_Lam 1516..>1553 CDD:238012
Domain II and I 1564..2123
Laminin_I 1582..1837 CDD:310534
COG4372 1711..2035 CDD:443500
Laminin_II 2018..2152 CDD:368703
LamG 2136..2285 CDD:238058
LamG 2314..2470 CDD:238058
LamG 2495..2659 CDD:238058
Laminin_G_1 2751..2880 CDD:395008
LamG 2900..3053 CDD:238058
NetANP_511154.3 LamNT 44..280 CDD:214532 69/258 (27%)
EGF_Lam 312..357 CDD:238012 22/45 (49%)
EGF_Lam 369..426 CDD:238012 20/63 (32%)
EGF_Lam 431..479 CDD:238012 19/58 (33%)
NTR_netrin-1_like 545..723 CDD:239634
Blue background indicates that the domain is not in the aligned region.

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