DRSC/TRiP Functional Genomics Resources

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Protein Alignment L1cam and Cont

DIOPT Version :10

Sequence 1:NP_032504.3 Gene:L1cam / 16728 MGIID:96721 Length:1259 Species:Mus musculus
Sequence 2:NP_649461.2 Gene:Cont / 40553 FlyBaseID:FBgn0037240 Length:1390 Species:Drosophila melanogaster


Alignment Length:1106 Identity:269/1106 - (24%)
Similarity:474/1106 - (42%) Gaps:199/1106 - (17%)


- Green bases have known domain annotations that are detailed below.


Mouse    11 LLLCSPCLL-------IQIPDEYKGHHVLE---------PPVITEQ--------SPRRLVVFPTD 51
            |.:|...:|       |::.|:...|:.|:         .|...:|        :..||:    :
  Fly   322 LFICESKVLYSSDNVNIKLDDKRPYHYGLDINDMERIPRGPYFVKQPNDTTFDVNKNRLI----N 382

Mouse    52 DISLKCEARGRPQVEFRWTK-----DGIHFKPKEELGVVVHEAPYSGSFTIEGNNSFAQR----- 106
            |::|.|.|.|.|...:.|.:     |.:.::..:.|.        ...:||.|.|.....     
  Fly   383 DVTLSCLANGYPTPSYTWYREVYVDDRLEYQKIDPLA--------QDRYTISGGNLIIYEPKQAL 439

Mouse   107 FQGIYRCYASNKLGTAMSHEIQL----VAEGAPKWPKETVKPVEVEEGESVVLPCNPPPSAAPLR 167
            .||.|.|.|.||.|...|....|    :.|...|...||   .|:..|:|:.  |:||.....:|
  Fly   440 DQGAYHCVAENKFGRIRSESAHLNFGFIMEFNLKRSAET---SEMNWGKSIF--CDPPQHYPDVR 499

Mouse   168 IYWMNSKILH-IKQDERVSMGQNGDLYFANVLTSDNHSDYICNAHFPGTRTII----QKEP-IDL 226
            .||......: :::|:||.:.::|.|||:.:.|.| .::|.|.     .:|::    :..| ..|
  Fly   500 YYWARDYFPNFVEEDQRVFVSRDGALYFSFIETVD-RANYSCT-----VQTLVSDTGRNGPFFPL 558

Mouse   227 RVKPTNSMIDRKPRLLFPTNSSSRL---VALQGQSLILECIAEGFPTPTIKWLHPSDPMPTDRVI 288
            ||.|.::.    ..|:| .|:..::   ..:.|..:.|||:|.|:|.|:..|....  :|..|..
  Fly   559 RVTPNSNY----QALIF-ANTFPKVFPEAPVAGDEIRLECMAFGYPIPSYNWTRQG--LPLQRNA 616

Mouse   289 YQ-NHNKTLQLLNVGEEDDGEYTCLAENSLGSARHAYYVTVEAAPYWLQKPQSHLYGPGETARLD 352
            |. |:.:.|.:.|....|:|||:|...|...:...:.|:.::..|.:....:..:..........
  Fly   617 YTINYGRVLIIQNATTNDNGEYSCTITNPRKTLMKSIYINIQMRPQFTIPLKDMIKDYNSDVTFI 681

Mouse   353 CQVQGRPQPEITWRINGMSME--TVNKDQKYRIEQGSLILSNVQ-PSDTMVTQCEARNQHGLLLA 414
            |:....|....||..|...::  .:|:| :|.|:...|.:..:: ..|..:.||.|:||.....:
  Fly   682 CEAFAIPDANYTWYKNAERLDPANINRD-RYIIQDNVLTIKFLEKDKDDAMYQCGAQNQLKTSFS 745

Mouse   415 NAYIYVVQLPARILTK--DNQTYMAVEGSTAYLLCKAFGAPVPSVQWLDEEGTTVLQ--DERFFP 475
            :|.:.|:.:.......  :::.|....|:|. ::|....||.|..|| .::|..:..  ..|..|
  Fly   746 SAQLRVLSMKPSFKKHPLESEVYAVYNGNTT-IVCDPEAAPRPKFQW-KKDGQVIGSGGHRRILP 808

Mouse   476 YANGTLSIRDLQANDTGRYFC----QAANDQNNVTILANLQVKEATQITQGPRSAIEKKGARVTF 536
              :|||:|.....:|.|.|.|    ||..|:::..::.   ::|...|...|:..:.|:...:..
  Fly   809 --SGTLTISPTSRDDEGIYTCIASNQAGTDESHARVIV---LQEIRFIETPPQRIVSKEHDLIFL 868

Mouse   537 TCQASFDPSLQASITWRGDGRDLQERGDSDKYFIED-GKLVIQSLDYSDQGNYSCVASTELDEVE 600
            .|:|:||..|..:..|:.:|..|:...|.....|.| .:|.:.:....|.|:|.||..:.::|:.
  Fly   869 HCEAAFDELLDIAYVWKHNGEVLKNNHDGTGRIIVDWNRLTVHNTSMRDAGDYECVVKSAVNEIS 933

Mouse   601 SRAQLLVVGSPGPVPHLELSDRHLLKQSQVHLSWSPAEDHNSPIEKYDIEFEDKEMAPEKWFSLG 665
            |:..:.:.|:||....:::..   :.:::..:.|.....:...|..|:|              ||
  Fly   934 SKTSVSIEGAPGAPGGVQVIQ---ISKTKAIIEWVDGSHNGRAIRYYNI--------------LG 981

Mouse   666 KVPGNQT---------------------STTLKLSPYVHYTFRVTAINKYGPGEPSPVSETVVTP 709
            :...|:|                     :..:.|:|:..|.|.|||:|..|.|.||..|....|.
  Fly   982 RTNWNRTWVNVSTHVQAREVDRYTSRQQAEVVNLTPWSAYEFSVTAVNDLGIGTPSAPSPIYSTY 1046

Mouse   710 EAAPEKNPVDVRGEGNETNNMVITWKPLRWMDWNAPQIQYRVQWRPQG----------KQETWRE 764
            |..|...|.:|.|.|.:..::.|||.||...:.::..|.|:|.|:.:|          ||:....
  Fly  1047 EDKPYIAPRNVGGGGGKIGDLTITWDPLLPQEQHSHGIHYKVFWKLKGAIEWASDEIKKQDHMGV 1111

Mouse   765 QTVSDPFLVVSNTSTFVPYEIKVQAVNNQGKGPEPQVTIGYSGEDYPQVSPELEDITIFNSSTVL 829
            ..|:.|.     .:.:..||:||||:|:.|||||.::.:.:|.||.|||:|:......:||:...
  Fly  1112 AVVNIPL-----NNYYTEYEVKVQAINSVGKGPESEIAVIHSAEDMPQVAPQKPIALAYNSTCFN 1171

Mouse   830 VRWRPVDLAQ--VKGHLKGYNVTYWWKGSQRKHSKRHIHKSHIVVPANTTS--AILSGLRPYSSY 890
            |.|:|:|:::  ::|.|.|:.:.||....|.:.|..::        :.||.  |::.||:|.:.|
  Fly  1172 VTWQPIDMSRENIRGKLIGHRLKYWKTTHQEEDSVYYL--------SRTTRNWALIVGLQPDTYY 1228

Mouse   891 HVEVQAFNGRGLGPAS----EWTFSTPEGVPGHPEALHLECQSDTSLLLHWQPPLSHNGVLTGYL 951
            .|:|.|:|..|.||.|    |.|:......|  |.::|:...:.:::.:.|:           |:
  Fly  1229 FVKVMAYNAAGEGPESERFEERTYRKAPQKP--PSSVHVYGINPSTVRVVWR-----------YV 1280

Mouse   952 ---LSYHPVEGESKEQLFFNLSDPELRTHN-------------LTNLNPDLQYRFQLQATTQQGP 1000
               ....|||| .|.:::  .||..:.|.|             :.||.|...|..::.|.:..|.
  Fly  1281 SPSQDEEPVEG-YKVRIW--ESDQNMITANNTIVPIGQKLESYINNLTPGKSYNMRVLAYSNGGD 1342

Mouse  1001 G 1001
            |
  Fly  1343 G 1343

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
L1camNP_032504.3 IgI_L1-CAM_like 35..130 CDD:409396 27/116 (23%)
Ig strand A 35..39 CDD:409396 1/3 (33%)
Ig strand A' 44..48 CDD:409396 2/3 (67%)
Ig strand B 53..60 CDD:409396 2/6 (33%)
Ig strand C 66..71 CDD:409396 1/4 (25%)
Ig strand C' 74..76 CDD:409396 0/1 (0%)
Ig strand D 83..86 CDD:409396 0/2 (0%)
Ig strand E 93..97 CDD:409396 0/3 (0%)
Ig strand F 109..117 CDD:409396 4/7 (57%)
Ig strand G 120..130 CDD:409396 3/13 (23%)
Ig 139..229 CDD:472250 26/95 (27%)
Ig strand B 153..157 CDD:409353 0/3 (0%)
Ig strand C 167..171 CDD:409353 2/3 (67%)
Ig strand E 190..194 CDD:409353 2/3 (67%)
Ig strand F 205..210 CDD:409353 2/4 (50%)
Ig strand G 221..224 CDD:409353 1/3 (33%)
Ig3_L1-CAM 247..329 CDD:409460 22/85 (26%)
Ig strand B 259..263 CDD:409460 1/3 (33%)
Ig strand C 272..276 CDD:409460 0/3 (0%)
Ig strand E 294..298 CDD:409460 1/3 (33%)
Ig strand F 308..313 CDD:409460 3/4 (75%)
Ig strand G 321..324 CDD:409460 0/2 (0%)
Ig 333..421 CDD:472250 17/90 (19%)
Ig strand B 349..353 CDD:409353 0/3 (0%)
Ig strand C 362..366 CDD:409353 1/3 (33%)
Ig strand E 386..390 CDD:409353 1/3 (33%)
Ig strand F 400..405 CDD:409353 2/4 (50%)
Ig strand G 413..416 CDD:409353 0/2 (0%)
Ig 427..513 CDD:472250 23/93 (25%)
Ig strand B 443..447 CDD:409353 0/3 (0%)
Ig strand C 456..460 CDD:409353 1/3 (33%)
Ig strand E 479..483 CDD:409353 3/3 (100%)
Ig strand F 493..498 CDD:409353 2/8 (25%)
Ig strand G 506..509 CDD:409353 0/2 (0%)
Ig 515..611 CDD:472250 24/96 (25%)
Ig strand B 534..538 CDD:409353 0/3 (0%)
Ig strand C 549..553 CDD:409353 0/3 (0%)
Cell attachment site. /evidence=ECO:0000255 553..555 0/1 (0%)
Cell attachment site. /evidence=ECO:0000255 562..564 0/1 (0%)
Ig strand E 573..577 CDD:409353 1/3 (33%)
Ig strand F 587..592 CDD:409353 2/4 (50%)
Ig strand G 600..603 CDD:409353 1/2 (50%)
FN3 611..708 CDD:238020 23/117 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 697..724 10/26 (38%)
fn3 717..798 CDD:394996 28/90 (31%)
fn3 824..906 CDD:394996 27/85 (32%)
FN3 917..1002 CDD:238020 21/101 (21%)
Bravo_FIGEY 1146..1235 CDD:464016
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1182..1209
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1228..1259
ContNP_649461.2 CLECT 139..>223 CDD:214480
Ig 361..466 CDD:472250 27/116 (23%)
Ig strand B 384..388 CDD:409356 1/3 (33%)
Ig strand C 397..409 CDD:409356 1/11 (9%)
Ig strand E 428..432 CDD:409356 1/3 (33%)
Ig strand F 443..448 CDD:409356 2/4 (50%)
Ig strand G 457..460 CDD:409356 1/2 (50%)
Ig 474..559 CDD:472250 24/95 (25%)
Ig strand B 485..489 CDD:409392 1/5 (20%)
Ig strand C 499..503 CDD:409392 2/3 (67%)
Ig strand E 523..527 CDD:409392 2/3 (67%)
Ig strand F 537..542 CDD:409392 2/9 (22%)
Ig strand G 553..556 CDD:409392 1/2 (50%)
Ig_3 584..644 CDD:464046 20/61 (33%)
Ig_3 660..738 CDD:464046 15/78 (19%)
Ig 756..844 CDD:472250 23/91 (25%)
Ig strand B 775..779 CDD:409358 1/4 (25%)
Ig strand C 788..792 CDD:409358 2/4 (50%)
Ig strand E 810..814 CDD:409358 3/3 (100%)
Ig strand F 824..829 CDD:409358 2/4 (50%)
Ig strand G 837..840 CDD:409358 0/2 (0%)
Ig <868..944 CDD:472250 20/75 (27%)
Ig strand C 881..885 CDD:409359 0/3 (0%)
Ig strand E 906..910 CDD:409359 1/3 (33%)
Ig strand F 920..925 CDD:409359 2/4 (50%)
Ig strand G 933..936 CDD:409359 1/2 (50%)
FN3 944..1043 CDD:238020 23/115 (20%)
FN3 1053..1146 CDD:238020 30/97 (31%)
fn3 1156..1244 CDD:394996 28/95 (29%)
fn3 1259..1346 CDD:394996 21/101 (21%)
Blue background indicates that the domain is not in the aligned region.

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