DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment L1cam and sdk

DIOPT Version :10

Sequence 1:NP_032504.3 Gene:L1cam / 16728 MGIID:96721 Length:1259 Species:Mus musculus
Sequence 2:NP_001284756.1 Gene:sdk / 31017 FlyBaseID:FBgn0021764 Length:2265 Species:Drosophila melanogaster


Alignment Length:1375 Identity:312/1375 - (22%)
Similarity:507/1375 - (36%) Gaps:342/1375 - (24%)


- Green bases have known domain annotations that are detailed below.


Mouse     1 MVVMLRYVWPLLLCSPCLLIQIPDEYKGHHVLEPPVITEQSPRRLVVFPTDDIS----------- 54
            ::|:|.|      |..|...     |...::.:...|.:|...:...|.|...|           
  Fly    38 VLVLLCY------CDSCFFC-----YADANLQQQNSIVQQQQLQAPRFTTHPSSSGSIVSEGSTK 91

Mouse    55 -LKCEARGRPQVEFRWTKDGIHFKPKEELGVVVHEAPYSGSFTIEGNNSFAQRFQ-------GIY 111
             |:|.|.|.||..:||.|||:..                |.|    ::|...||.       |.|
  Fly    92 ILQCHALGYPQPTYRWLKDGVPV----------------GDF----SSSQFYRFHSTRREDAGSY 136

Mouse   112 RCYASNKLGTAMSHEIQLVAEGAPKWPKETVKPVEVEEGESVVLPCNPPPSAAPL-RIYWMN--- 172
            :|.|.|..|:..|.:..:|......:...|...:.|..|...:... ||..:.|: .:.|.:   
  Fly   137 QCIARNDAGSIFSEKSDVVVAYMGIFENTTEGRLTVISGHPAIFDM-PPIESIPVPSVMWQSEDG 200

Mouse   173 -------------SKILHIKQDERVSMGQNGDLYFANVLTSD---NHSDYICNAHFPGTRTI--- 218
                         ::::.:..||....|     |.|..:.:.   ..|....:.:..|...|   
  Fly   201 PLNYDIKYAFTHANQLIILSADENDRKG-----YRAKAINTQLGKEESSAFVHLNVSGDPYIEVA 260

Mouse   219 --IQKEPIDLRVKPTNSMIDRKPRLLFPTNSSSRLVALQGQSLILECIAEGFPTPTIKWLHPSDP 281
              |...|.|::||....:::                        |:|||...|...::.|...|.
  Fly   261 PEIIVRPQDVKVKVGTGVVE------------------------LQCIANARPLHELETLWLKDG 301

Mouse   282 MPTD-----RVIYQNHNKTLQLLNVGEEDDGEYTCLAENSLGSARHAYYVTVEAA--------PY 333
            :..:     ..:....|:||.||.......|||||...     .|...|..|.|:        |.
  Fly   302 LAVETAGVRHTLNDPWNRTLALLQANSSHSGEYTCQVR-----LRSGGYPAVSASARLQILEPPL 361

Mouse   334 WLQKPQSHLYGP-GETARLDCQVQGRPQPEITWRINGMSMETVNKDQKYRIE-QGSLILSNVQPS 396
            :....::..:|. |...:|.|.|.|.|.|::.|..|..|::...:..:|.:. ..:|::..:...
  Fly   362 FFTPMRAETFGEFGGQVQLTCDVVGEPTPQVKWFRNAESVDAHIESGRYTLNTDNTLVIKKLILD 426

Mouse   397 DTMVTQCEARNQHGLLLANAYIYVVQLPAR----------------------------------- 426
            |..:.||.|.|:.|...|:.::.|....|:                                   
  Fly   427 DAAMFQCLAINEAGENSASTWLRVKTKTAKNRVKRLAQPRILRVRASHAGLGSEKGSESGSSDRR 491

Mouse   427 ---------ILTKDNQTYMAVEGSTAYLLCKAFGAPVPSVQWLDEEGTTVLQDERFFPYANGTLS 482
                     |:....|...|::|..|.:.|:|.|:|.|::.|:..|...|....|.....:|.|.
  Fly   492 KEFRFASAPIMELPPQNVTALDGKDATISCRAVGSPNPNITWIYNETQLVDISSRVQILESGDLL 556

Mouse   483 IRDLQANDTGRYFCQAANDQNNVTILANLQVKEATQITQGPRSAIEKKGARVTFTCQASFDPSLQ 547
            |.::::.|.|.|.|..||:..:|...|.|.|...|||.|.|.......|...|..|:.|.|||:.
  Fly   557 ISNIRSVDAGLYICVRANEAGSVKGEAYLSVLVRTQIIQPPVDTTVLLGLTATLQCKVSSDPSVP 621

Mouse   548 ASITWRGDGRDLQERGDSDKYFIE-DGKLVIQSLDYSDQGNYSCVASTELDEVESRAQLLVVGSP 611
            .:|.|..:|:......:|.:..:: ||:|.||::..||.|:|:||.::........|:|.|:..|
  Fly   622 YNIDWYREGQSSTPISNSQRIGVQADGQLEIQAVRASDVGSYACVVTSPGGNETRAARLSVIELP 686

Mouse   612 GPVPHLELSDRHLLKQSQVHLSWSPAEDHNSPIEKYDIE-FEDKEMAPE-----KWFS-LGKVPG 669
            .|..::::......:|..:::||:|..|.||||.|:.|: .|..|:.|.     .|.: |..|..
  Fly   687 FPPSNVKVERLPEPQQRSINVSWTPGFDGNSPISKFIIQRREVSELGPVPDPLLNWITELSNVSA 751

Mouse   670 NQTSTTLK-LSPYVHYTFRVTAINKYGPGEPSPVSETVVTPEAAPEKNPVDVRGEGNETNNMVIT 733
            :|....|: |.....|.|||:|:|:.|.|.||..|..|..|:.||...||...|.....:.::..
  Fly   752 DQRWILLENLKAATVYQFRVSAVNRVGEGSPSEPSNVVELPQEAPSGPPVGFVGSARSMSEIITQ 816

Mouse   734 WKPLRWMDWNAPQIQYRVQWRPQGKQET-WREQTVSDP----FLVVSNTSTFVPYEIKVQAVNNQ 793
            |:|......|...:.|.:::|..|.... |..|.:::.    || :....|:..|.:::.|.||.
  Fly   817 WQPPLEEHRNGQILGYILRYRLFGYNNVPWSYQNITNEAQRNFL-IQELITWKDYIVQIAAYNNM 880

Mouse   794 GKGPEPQVTIGYSGEDYPQVSPELEDITIFNSSTVLVRWRPVDLAQVKGHLKGYNVTYW------ 852
            |.|...:.:...:.|..|:..|....:...||:....||.|.:..|:.|..:||.:..|      
  Fly   881 GVGVYTEGSKIKTKEGVPEAPPTNVKVEAINSTAARCRWTPPNPQQINGINQGYKIQAWQRRLID 945

Mouse   853 --WKGSQRKHSKRHIHKSHIVVPANTTSAILSGLRPYSSYHVEVQAFNGRGLGPA-SEWTFSTPE 914
              |:..:|:  .:.:..| ::.|....:|||.||..::.|::.|..|...|.|.| |:....|.:
  Fly   946 GEWRDIERR--MKTVPPS-LIDPLAEQTAILGGLEKFTEYNISVLCFTDPGDGVASSQVAVMTMD 1007

Mouse   915 GVPGHPEALHLECQSDTSLLLHWQPPLSHNGVLTGYLLSYH------------------------ 955
            .||.....||.:..||.|:.:.|.||.:.||:||||.:.|.                        
  Fly  1008 DVPDEVTGLHFDDVSDRSVKVLWAPPRASNGILTGYTVRYQVKDRPDTLKSFNLTADDTELTVNQ 1072

Mouse   956 ----------------------------------------------------------------- 955
                                                                             
  Fly  1073 LQATTHYWFEIVAWTRVGSGIPKTATIQSGVEPVLPHAPTALALSNIEAFSVVLQFTPGFDGNSS 1137

Mouse   956 ----PVEGESKEQLFF----NLSDPELRTHNLTNLNPDLQYRFQLQATTQQG---PGEAIVREGG 1009
                .|||::...:.:    .::||:..|..:|.|.|..|||.:|.|:...|   |.|| .::..
  Fly  1138 ITKWKVEGQTARNMTWFTICEINDPDAETLTVTGLVPFTQYRLRLSASNVVGSSKPSEA-TKDFQ 1201

Mouse  1010 TMALFGK-PDFGNISATAGENYSV-VSWVPRKGQCNF-----RFHILFKAL----------PEGK 1057
            |:....| |.| |::..|.....: |.|:|.: |..:     .::|.:|.|          |...
  Fly  1202 TIQARPKHPPF-NVTVRAMSAQQLRVRWIPLQ-QTEWYGNPRGYNISYKQLVKTPGTIKYVPRSV 1264

Mouse  1058 VSPDHQPQPQYVSYNQSSYTQWNL---------------QPDTKYEIHLIKEKVLLH-HLDVKTN 1106
            |..||...    |:...|..:|.|               :.||..|  ..:|.|..: .|||:.|
  Fly  1265 VIEDHTAN----SHVLDSLEEWTLYEVKMNACNDVGCSKESDTAVE--RTREAVPSYGPLDVQAN 1323

Mouse  1107 GTGPVRVSTT 1116
            .|.    |||
  Fly  1324 ATS----STT 1329

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
L1camNP_032504.3 IgI_L1-CAM_like 35..130 CDD:409396 28/113 (25%)
Ig strand A 35..39 CDD:409396 1/3 (33%)
Ig strand A' 44..48 CDD:409396 0/3 (0%)
Ig strand B 53..60 CDD:409396 3/18 (17%)
Ig strand C 66..71 CDD:409396 2/4 (50%)
Ig strand C' 74..76 CDD:409396 0/1 (0%)
Ig strand D 83..86 CDD:409396 0/2 (0%)
Ig strand E 93..97 CDD:409396 2/3 (67%)
Ig strand F 109..117 CDD:409396 4/7 (57%)
Ig strand G 120..130 CDD:409396 2/9 (22%)
Ig 139..229 CDD:472250 18/114 (16%)
Ig strand B 153..157 CDD:409353 0/3 (0%)
Ig strand C 167..171 CDD:409353 0/3 (0%)
Ig strand E 190..194 CDD:409353 0/3 (0%)
Ig strand F 205..210 CDD:409353 0/4 (0%)
Ig strand G 221..224 CDD:409353 0/2 (0%)
Ig3_L1-CAM 247..329 CDD:409460 19/86 (22%)
Ig strand B 259..263 CDD:409460 1/3 (33%)
Ig strand C 272..276 CDD:409460 0/3 (0%)
Ig strand E 294..298 CDD:409460 2/3 (67%)
Ig strand F 308..313 CDD:409460 4/4 (100%)
Ig strand G 321..324 CDD:409460 1/2 (50%)
Ig 333..421 CDD:472250 20/89 (22%)
Ig strand B 349..353 CDD:409353 1/3 (33%)
Ig strand C 362..366 CDD:409353 0/3 (0%)
Ig strand E 386..390 CDD:409353 1/3 (33%)
Ig strand F 400..405 CDD:409353 2/4 (50%)
Ig strand G 413..416 CDD:409353 1/2 (50%)
Ig 427..513 CDD:472250 26/85 (31%)
Ig strand B 443..447 CDD:409353 1/3 (33%)
Ig strand C 456..460 CDD:409353 0/3 (0%)
Ig strand E 479..483 CDD:409353 2/3 (67%)
Ig strand F 493..498 CDD:409353 2/4 (50%)
Ig strand G 506..509 CDD:409353 0/2 (0%)
Ig 515..611 CDD:472250 30/96 (31%)
Ig strand B 534..538 CDD:409353 1/3 (33%)
Ig strand C 549..553 CDD:409353 1/3 (33%)
Cell attachment site. /evidence=ECO:0000255 553..555 0/1 (0%)
Cell attachment site. /evidence=ECO:0000255 562..564 0/1 (0%)
Ig strand E 573..577 CDD:409353 2/3 (67%)
Ig strand F 587..592 CDD:409353 2/4 (50%)
Ig strand G 600..603 CDD:409353 0/2 (0%)
FN3 611..708 CDD:238020 34/104 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 697..724 11/26 (42%)
fn3 717..798 CDD:394996 20/85 (24%)
fn3 824..906 CDD:394996 25/90 (28%)
FN3 917..1002 CDD:238020 32/184 (17%)
Bravo_FIGEY 1146..1235 CDD:464016
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1182..1209
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1228..1259
sdkNP_001284756.1 Ig_3 72..142 CDD:464046 23/89 (26%)
Ig 280..344 CDD:409353 18/92 (20%)
Ig strand B 280..283 CDD:409353 1/26 (4%)
Ig strand C 292..298 CDD:409353 1/5 (20%)
Ig strand E 319..323 CDD:409353 2/3 (67%)
Ig strand F 333..338 CDD:409353 4/4 (100%)
Ig 360..451 CDD:472250 21/90 (23%)
Ig strand B 378..382 CDD:409353 1/3 (33%)
Ig strand C 391..395 CDD:409353 0/3 (0%)
Ig strand E 416..420 CDD:409353 1/3 (33%)
Ig strand F 430..435 CDD:409353 2/4 (50%)
Ig strand G 443..446 CDD:409353 1/2 (50%)
Ig 502..587 CDD:472250 25/84 (30%)
Ig strand B 517..521 CDD:409353 1/3 (33%)
Ig strand C 530..534 CDD:409353 0/3 (0%)
Ig strand E 554..557 CDD:409353 1/2 (50%)
Ig strand F 567..572 CDD:409353 2/4 (50%)
Ig strand G 580..583 CDD:409353 0/2 (0%)
Ig 592..682 CDD:472250 28/89 (31%)
Ig strand B 608..612 CDD:409353 1/3 (33%)
Ig strand C 623..627 CDD:409353 1/3 (33%)
Ig strand E 648..652 CDD:409353 2/3 (67%)
Ig strand F 662..667 CDD:409353 2/4 (50%)
Ig strand G 675..678 CDD:409353 0/2 (0%)
FN3 686..789 CDD:238020 33/102 (32%)
FN3 798..893 CDD:238020 20/95 (21%)
FN3 901..1005 CDD:238020 27/106 (25%)
FN3 <960..>1261 CDD:442628 63/304 (21%)
fn3 1317..1402 CDD:394996 8/17 (47%)
FN3 1415..1507 CDD:238020
FN3 1513..1608 CDD:238020
FN3 1583..>2011 CDD:442628
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.