DRSC/TRiP Functional Genomics Resources

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Protein Alignment Krt36 and LamC

DIOPT Version :9

Sequence 1:NP_001167570.1 Gene:Krt36 / 16673 MGIID:109364 Length:473 Species:Mus musculus
Sequence 2:NP_001260974.1 Gene:LamC / 36615 FlyBaseID:FBgn0010397 Length:640 Species:Drosophila melanogaster


Alignment Length:500 Identity:122/500 - (24%)
Similarity:216/500 - (43%) Gaps:106/500 - (21%)


- Green bases have known domain annotations that are detailed below.


Mouse    26 SRISSIHSMGSCRAPSLVGTVGSVSSFRTGFSGPGSCLPGSYLSSGCHSSGFAGSGGWFCEGAFN 90
            ||.|:...:|.....|.||.....|..||.                                  .
  Fly    13 SRASTSTPVGGASTSSRVGATSPTSPTRTS----------------------------------R 43

Mouse    91 GNEKATMQILNDRLANYLEKVRQLEQENTQLECRI---REWYECQIPYICPDYQSYFKTAEELQQ 152
            ..||..:|.||||||.|::::|.||.||::|...:   ::....:...:...|:.....|.:|..
  Fly    44 QQEKEELQHLNDRLACYIDRMRNLENENSRLTQELNLAQDTVNRETSNLKAVYEKELAAARKLLD 108

Mouse   153 KILLTKSENARLILQI-------------------------DNAKLAADDF-------------R 179
            :   |..|.|:|.:.|                         :||:|..:.:             |
  Fly   109 E---TAKEKAKLEIDIKRLWEENDDLKPRLDKKTKEATVAENNARLYENRYNEVNGKYNQSLADR 170

Mouse   180 TKYE---TELSL-RQLVEADINGLRRILDELTLCKADLEAQVESLKEELLCLKRNHEEEVNALR- 239
            .|:|   .||:| .:.:...::.||:.|:..||.:.|||.|.:||:|||....:.|.:|:...| 
  Fly   171 KKFEDQAKELALENERLRRQLDDLRKQLEAETLARVDLENQNQSLREELAFKDQVHTQELTETRS 235

Mouse   240 ------SQLGDRLNVEVDAAPPVDLNKILDDMRCQYETLVENNRRDVEAWFNTQTEELNQQVVSS 298
                  |::..||:.:.:|    .|.:.|.::|.|||..:..||.::|..::.:.:.| :...:.
  Fly   236 RRQIEISEIDGRLSRQYEA----KLQQSLQELRDQYEGQMRINREEIELLYDNEIQNL-KAAANR 295

Mouse   299 SEQLQCCQTEIIELRRT-VNSLEIELQAQQSMRNSLESTLAETEARYSSQLGQMQCLITNVESQL 362
            :.|.....||.:.|.|| ::.|..:||..:.....|.:.:.|.|....::..:....|.::|::|
  Fly   296 AAQGSALATEEVRLMRTKIDGLNAKLQNLEDTNAGLNARIRELENLLDTERQRHNQYIASLEAEL 360

Mouse   363 AEIRCDLERQNHEYQVLLDVKARLESEIATYRRLLDGEDCKL----PAHPCSTECKPAVRVPYIP 423
            ..:|.::..|..|||.|:|:|..|:.|||.|.:||.||:.:|    |..| :|:...:....::.
  Fly   361 QRMRDEMAHQLQEYQGLMDIKVSLDLEIAAYDKLLCGEERRLNIESPGRP-TTDSGISSNGSHLT 424

Mouse   424 STTCTPAGPCTPAGPCTPAPQVS-----TQIRTITEEIRDGRVIS 463
            ::..:.:|..||:|..:..|.:|     .:.||:.:|..| |.:|
  Fly   425 ASASSRSGRVTPSGRRSATPGISGSSAVKRRRTVIDESED-RTLS 468

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Krt36NP_001167570.1 Head. /evidence=ECO:0000255 1..93 10/66 (15%)
Filament 92..403 CDD:365827 96/363 (26%)
Coil 1A. /evidence=ECO:0000255 94..128 15/36 (42%)
Linker 1. /evidence=ECO:0000255 129..139 0/9 (0%)
Coil 1B. /evidence=ECO:0000255 140..240 34/148 (23%)
Linker 12. /evidence=ECO:0000255 241..256 3/14 (21%)
Coil 2. /evidence=ECO:0000255 257..400 40/143 (28%)
Tail. /evidence=ECO:0000255 401..473 15/71 (21%)
LamCNP_001260974.1 Filament 45..401 CDD:278467 96/363 (26%)
ATP-synt_B <67..>142 CDD:304375 13/77 (17%)
MreC <178..>224 CDD:302802 17/45 (38%)
LTD 473..574 CDD:279300
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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