DRSC/TRiP Functional Genomics Resources

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Protein Alignment PRICKLE2 and prkl-1

DIOPT Version :10

Sequence 1:NP_942559.1 Gene:PRICKLE2 / 166336 HGNCID:20340 Length:844 Species:Homo sapiens
Sequence 2:NP_741435.2 Gene:prkl-1 / 177463 WormBaseID:WBGene00022727 Length:523 Species:Caenorhabditis elegans


Alignment Length:499 Identity:186/499 - (37%)
Similarity:254/499 - (50%) Gaps:63/499 - (12%)


- Green bases have known domain annotations that are detailed below.


Human    15 KLMFDFQRNSTSDDDSGCALEEYAWVPPGLKPEQVHQYYSCLPEEKVPYVNSPGEKLRIKQLLHQ 79
            ::..|..|:|||||||||||:||||||.||||..||.|::||||.|||::.|.|||.|.:|..:|
 Worm    37 RIAADAHRHSTSDDDSGCALDEYAWVPSGLKPNMVHAYFACLPENKVPFIGSAGEKWRQRQSRYQ 101

Human    80 LPPHDNEVRYCNSLDEEEKRELKLFSSQRKRENLGRGNVR--PFPVTMTGAICEQCGGQINGGDI 142
            |||.|::||||..|:.||...|::|...||.|.||.|.|:  ||...     ||:|..::..|:|
 Worm   102 LPPQDSDVRYCEDLNAEEADTLRMFERTRKTECLGSGVVQYAPFDTK-----CEKCPKRLEEGEI 161

Human   143 AVFASRAGHGVCWHPPCFVCTVCNELLVDLIYFYQDGKIYCGRHHAECLKPRCAACDEIIFADEC 207
            :|.|:|.|..  :||.||.|..|:.||||||||..|.:|||||||||.:|||||.|||:||.|||
 Worm   162 SVMAARTGKR--YHPSCFRCQTCDVLLVDLIYFAHDNQIYCGRHHAEQVKPRCAKCDEVIFGDEC 224

Human   208 TEAEGRHWHMKHFCCFECETVLGGQRYIMKEGRPYCCHCFESLYAEY-CDTCAQHIGIDQGQMTY 271
            .|||||.||..||.|.:|..||..|:|:.:..:|.|..||.|..:.: |.||......|...|:.
 Worm   225 LEAEGRSWHFHHFQCAQCNDVLADQKYMQRANKPVCLKCFHSSSSTFSCTTCRLSFSSDTPHMSQ 289

Human   272 DGQHWHATETCFCCAHCKKSLLGRPFLPKQGQIFCSRACSAGEDPNGSDSSDSAFQNARAKESRR 336
            ...||||:..||||..|.|:|||..:......:||......|||....|  :....:...|.:::
 Worm   290 GDLHWHASAECFCCCVCSKNLLGVKYSRVGESLFCGYQTCGGEDEELLD--EDRLGSPHRKVTQK 352

Human   337 SAKIGKNKGKTEEPMLNQHSQLQVSSNRLSADVDPLSLQMDM-LSLSSQTPSL---NRDPIWRSR 397
            |.|:                 :::.::...|...|..:|.:: .:::.|.||:   |:.|....|
 Worm   353 STKV-----------------VRIPASPRVAPRHPHVIQQNLTTTMTIQKPSVVIQNQRPKPPQR 400

Human   398 EEP-----YHYGNKMEQNQTQSP-------LQLLSQCNIRTSYS--PGGQGAGAQPEMWGKHFSN 448
            ..|     ..|...:..:...||       .:|.:..|....||  |.....| .|||.|...|:
 Worm   401 APPPPPSENIYETVLPCSSNNSPNFDKKYSHELPTSPNHHNYYSKTPNNLLTG-YPEMDGYSTSS 464

Human   449 PKRSSSLAMTGHAGSFIKECREDYYPGRLRSQESYSDMSSQSFS 492
            ...|..               |..|...:.:..|.|.:.::|.|
 Worm   465 SSDSDD---------------EQLYISNIMAAASLSRVPAKSSS 493

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PRICKLE2NP_942559.1 PET_Prickle 26..122 CDD:193602 57/97 (59%)
LIM1_Prickle 130..188 CDD:188799 30/57 (53%)
LIM2_Prickle 193..248 CDD:188802 30/54 (56%)
LIM3_Prickle 253..311 CDD:188804 20/58 (34%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 314..350 6/35 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 481..519 4/12 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 639..709
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 822..844
prkl-1NP_741435.2 PET_Prickle 48..144 CDD:193602 56/95 (59%)
LIM1_Testin_like 149..204 CDD:188726 29/56 (52%)
LIM2_Testin_like 210..262 CDD:188727 29/51 (57%)
LIM 283..324 CDD:413332 15/40 (38%)
Blue background indicates that the domain is not in the aligned region.

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