DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PRICKLE2 and prickle2

DIOPT Version :10

Sequence 1:NP_942559.1 Gene:PRICKLE2 / 166336 HGNCID:20340 Length:844 Species:Homo sapiens
Sequence 2:XP_031757102.1 Gene:prickle2 / 100126208 XenbaseID:XB-GENE-482891 Length:893 Species:Xenopus tropicalis


Alignment Length:844 Identity:665/844 - (78%)
Similarity:749/844 - (88%) Gaps:11/844 - (1%)


- Green bases have known domain annotations that are detailed below.


Human     3 TVMPLEMEKTISKLMFDFQRNSTSDDDSGCALEEYAWVPPGLKPEQVHQYYSCLPEEKVPYVNSP 67
            |.||||||||::|||||||||||||||||||||||||:|||||||||||||||||::||||||||
 Frog    59 TAMPLEMEKTMNKLMFDFQRNSTSDDDSGCALEEYAWIPPGLKPEQVHQYYSCLPDDKVPYVNSP 123

Human    68 GEKLRIKQLLHQLPPHDNEVRYCNSLDEEEKRELKLFSSQRKRENLGRGNVRPFPVTMTGAICEQ 132
            |||.||||||||||||||||||||||||||||||||||:||||||||||||||||||||||||||
 Frog   124 GEKSRIKQLLHQLPPHDNEVRYCNSLDEEEKRELKLFSNQRKRENLGRGNVRPFPVTMTGAICEQ 188

Human   133 CGGQINGGDIAVFASRAGHGVCWHPPCFVCTVCNELLVDLIYFYQDGKIYCGRHHAECLKPRCAA 197
            |||||||||:|||||||||||||||.||||.:|||||||||||||||||||||||||||||||||
 Frog   189 CGGQINGGDMAVFASRAGHGVCWHPQCFVCIICNELLVDLIYFYQDGKIYCGRHHAECLKPRCAA 253

Human   198 CDEIIFADECTEAEGRHWHMKHFCCFECETVLGGQRYIMKEGRPYCCHCFESLYAEYCDTCAQHI 262
            |||||||||||||||||||||||||||||||||||||||||||||||:|||||||||||||||||
 Frog   254 CDEIIFADECTEAEGRHWHMKHFCCFECETVLGGQRYIMKEGRPYCCNCFESLYAEYCDTCAQHI 318

Human   263 GIDQGQMTYDGQHWHATETCFCCAHCKKSLLGRPFLPKQGQIFCSRACSAGEDPNGSDSSDSAFQ 327
            ||||||||||||||||||.||||||||||||||||||||||||||||||.|||||||||||||||
 Frog   319 GIDQGQMTYDGQHWHATENCFCCAHCKKSLLGRPFLPKQGQIFCSRACSVGEDPNGSDSSDSAFQ 383

Human   328 NARAKESRRSAKIGKNKGKTEEPMLNQHSQLQVSSNRLSADVDPLSLQMDMLSLSSQTPSLNRDP 392
            |||||||||||||||||||.::..:||...|.|:||||||||||||||||:||:|||.||||||.
 Frog   384 NARAKESRRSAKIGKNKGKLDDGNMNQCGPLHVASNRLSADVDPLSLQMDLLSVSSQNPSLNRDQ 448

Human   393 IWRSREEPYHYGNKMEQNQTQSPLQLLSQCNIRTSYSPGGQGAGAQPEMWGKHFSNPKRSSSLAM 457
            :||||:|.||||||:|::|:||||||||||||||||:. ||||||||:||.|||:|.||  ||:|
 Frog   449 LWRSRDELYHYGNKIERSQSQSPLQLLSQCNIRTSYNT-GQGAGAQPDMWAKHFNNQKR--SLSM 510

Human   458 TGHAGSFIKECREDYYPGRLRSQESYSDMSSQSFSETRGSIQVPKYEEEEEEEGGLSTQQCRTRH 522
            .||:.||.:|.|||||.||:|.|||:||.|:.||:|.|.|::|||:||::.    ::.||||:||
 Frog   511 MGHSESFSQEGREDYYQGRVRQQESFSDASNHSFNEARSSLRVPKFEEKKP----MNPQQCRSRH 571

Human   523 PISSLKYTEDMTPTEQTPRGSMESLALSNATGLSADGGAKRQEHLSRFSMPDLSKDSGMNVSEKL 587
            ||::||:||.:|||||||||||||||||||||:|||||.||||||||||||||||||||||||||
 Frog   572 PINALKFTEGLTPTEQTPRGSMESLALSNATGVSADGGPKRQEHLSRFSMPDLSKDSGMNVSEKL 636

Human   588 SNMGTLNSSMQFRSAESVRSLLSAQQYQEMEGNLHQLSNPIGYRDLQSHGRMHQSFDFDGGMAGS 652
            |||||||||.||||.|||||||||||||::..||..|:|...|||:..|.|:|..|.||.||:.:
 Frog   637 SNMGTLNSSSQFRSVESVRSLLSAQQYQDLAPNLSDLANSGKYRDVPPHSRLHHGFTFDAGMSMN 701

Human   653 KLPGQEGVRIQPMSERTRRRATSRDDNRRFRPHRSRRSRRSRSDNALHLASEREAISRLKDRPPL 717
            :|..|..:::.|||||||||..:||:::.:|.||.|||||||||||||||:|:  .:::|::|..
 Frog   702 ELTAQNNLKLTPMSERTRRRTQARDNDQHYRHHRQRRSRRSRSDNALHLATEQ--CNKIKEKPLA 764

Human   718 RAREDYDQFMRQRSFQESMGHGSRRDLYGQCPRTVSDLALQNAFGDRWGPYFAEYDWCSTCSSSS 782
            |.||:|::.|:||..::||....||::|.:..||.|||||||...||||.:..:|||||||||||
 Frog   765 RTREEYERLMQQRGVRDSMDQAVRREMYNRYQRTASDLALQNHLYDRWGQHVNDYDWCSTCSSSS 829

Human   783 ESDNEGYFLGEPIPQPARLRYVTSDELLHKYS--SYGLPKSSTLGGRGQLHSRKRQKSKNCIIS 844
            ||||||||||||||||.|||||||::|:|:|.  |.|:|||||||||||||||||:||||||||
 Frog   830 ESDNEGYFLGEPIPQPTRLRYVTSEDLIHQYGQCSGGIPKSSTLGGRGQLHSRKRRKSKNCIIS 893

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PRICKLE2NP_942559.1 PET_Prickle 26..122 CDD:193602 90/95 (95%)
LIM1_Prickle 130..188 CDD:188799 53/57 (93%)
LIM2_Prickle 193..248 CDD:188802 53/54 (98%)
LIM3_Prickle 253..311 CDD:188804 56/57 (98%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 314..350 33/35 (94%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 481..519 17/37 (46%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 639..709 38/69 (55%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 822..844 20/21 (95%)
prickle2XP_031757102.1 PET_Prickle 82..178 CDD:193602 90/95 (95%)
LIM1_Prickle 186..244 CDD:188799 53/57 (93%)
LIM2_Prickle 249..304 CDD:188802 53/54 (98%)
LIM3_Prickle 309..367 CDD:188804 56/57 (98%)

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