DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kif3a and Khc

DIOPT Version :10

Sequence 1:XP_006532388.1 Gene:Kif3a / 16568 MGIID:107689 Length:725 Species:Mus musculus
Sequence 2:NP_476590.1 Gene:Khc / 36810 FlyBaseID:FBgn0001308 Length:975 Species:Drosophila melanogaster


Alignment Length:377 Identity:65/377 - (17%)
Similarity:109/377 - (28%) Gaps:140/377 - (37%)


- Green bases have known domain annotations that are detailed below.


Mouse  1339 HIDCHKSYMESLRNDQVLQGFSVDKGEFTCPLCRQFANSVLPCYPGSNVENNLWQRPSNKSTQDL 1403
            |.:|..:::|                || ..|.:.|     ||         ||.|.|::..|..
  Fly     5 HENCKPNFVE----------------EF-IELYKSF-----PC---------LWHRKSSEYEQQK 38

Mouse  1404 IKEVEELQGRPGAFPVSISSETNLSKEMESVMKDIKNTTQKKYRDYSKTPGSPDNDFLFMYSVAR 1468
            .:..:.|        |....|.:.....|:|.:.| |..:..||...:....|            
  Fly    39 QRAYDAL--------VQKYREVDPQATKETVKRKI-NALRTGYRKQLRRLNRP------------ 82

Mouse  1469 TNLELELIHRGGSLCSGGASTAGKRSCLN--------QLFHVLALHMRLYTIDSEYNPWKKLTHL 1525
                        |..:|.:|::...|...        |||..|          .:|..|.|....
  Fly    83 ------------SRAAGSSSSSNNNSDAQRQPTWWYFQLFDFL----------DDYPSWLKQNGR 125

Mouse  1526 VEDMNSQVGSEDQQPEVPVLYHDVTSLLLIQILMMPQPLQKEHFTCIVKVL-------------F 1577
            .|.......|:|.:.|..   .|:...|      ..|..|::|.|...:..             .
  Fly   126 QEQSQQAHVSQDSEVEQA---DDIDDSL------EQQQQQQQHHTINSQWTESCSSGSQHQFQPL 181

Mouse  1578 TLLYTQALAALSVKGTEE---------------DRSA--WKHLGALKKDTCDAEKSY-EVLLGFV 1624
            |....::.|:....|.:|               |.|.  .||:....:...:.:..: :.|:..:
  Fly   182 TTAQRRSTASARFSGEQELDELVDQKLNDFLQHDPSVVYGKHVANKLRSLNELQNKFAQKLINDI 246

Mouse  1625 ISELSKGKLYCEEGAQECTMVSPIAWSPESMERYIQDFCLPFLRISSLLQHH 1676
            |.|...|.|     :::||:.......|.:.:|             :.|.||
  Fly   247 IFEAEMGSL-----SRDCTLEGLTGVEPNNSQR-------------NSLTHH 280

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kif3aXP_006532388.1 KISc_KIF3 13..345 CDD:276822
Smc <450..>614 CDD:440809
KhcNP_476590.1 KISc_KHC_KIF5 10..333 CDD:276820 63/372 (17%)
Smc <341..>807 CDD:440809
Khc_CBD_cc 856..925 CDD:467880
Blue background indicates that the domain is not in the aligned region.

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