DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kcna3 and Shab

DIOPT Version :9

Sequence 1:NP_032444.2 Gene:Kcna3 / 16491 MGIID:96660 Length:528 Species:Mus musculus
Sequence 2:NP_001189037.1 Gene:Shab / 38352 FlyBaseID:FBgn0262593 Length:1607 Species:Drosophila melanogaster


Alignment Length:646 Identity:191/646 - (29%)
Similarity:285/646 - (44%) Gaps:165/646 - (25%)


- Green bases have known domain annotations that are detailed below.


Mouse     6 GDHLLEPEA------------AGGGGGDPPQG-----------GCGSGGGGGGCD---RYEPLPP 44
            |.||..|.|            ||.|.|....|           |.|||.|.|...   ||.|.|.
  Fly   169 GGHLAGPSAGLPAGAVGSGAGAGAGAGASVTGSGSGAGTGTGTGAGSGSGSGAAGKEVRYAPFPV 233

Mouse    45 ALP---------------------AAGEQDCCG-------------------------------- 56
            |.|                     .|..|...|                                
  Fly   234 ASPTHSIPTTSQQIVGSVGGVGVGGASSQSISGGVPTHSQSNTTGALQRTHSRSMSSIPPPEPFM 298

Mouse    57 --------ERVVINISGLRFETQLKTLCQFPETLLGDPKRRMRY-------------FDPLRNEY 100
                    .||.||:.|:|.|...:||.:.|.|.||    |:|.             :....|||
  Fly   299 IAQSKAVNSRVSINVGGVRHEVLWRTLERLPHTRLG----RLRECTTHEAIVELCDDYSLADNEY 359

Mouse   101 FFDRNRPSFDAILYYYQSGGRIRRPVNVPIDIFSEEIRFYQLGE------------EAMEKFRED 153
            ||||:..||.:||.:|:: |::.....:.:..||:::.::.:.|            :..|...|:
  Fly   360 FFDRHPKSFSSILNFYRT-GKLHIVDEMCVLAFSDDLEYWGVDELYLESCCQHKYHQRKENVHEE 423

Mouse   154 EGFLREEERPLPRRD-----------FQRQVWLLFEYPESSGPARGIAIVSVLVILISIVIFCLE 207
               :|:|...|.:||           :|:.:|.|.|.|.:|..||.||::|:|.|::|.:...|.
  Fly   424 ---MRKEAESLRQRDEEEFGEGKCAEYQKYLWELLEKPNTSFAARVIAVISILFIVLSTIALTLN 485

Mouse   208 TLPEFRDEKDYPASPSQDVFEAANNSTSGAPSGASSFSDPFFVVETLCIIWFSFELLVRFFACPS 272
            |||:.:                  :..:|.|......:    :||.:||.||:.|.::||.|.|.
  Fly   486 TLPQLQ------------------HIDNGTPQDNPQLA----MVEAVCITWFTLEYILRFSASPD 528

Mouse   273 KATFSRNIMNLIDIVAIIPYFITLGTELAERQGNGQQAMSLAILRVIRLVRVFRIFKLSRHSKGL 337
            |..|.:..:|:||::||:|||::|......:....|......:::|.|::|:.||.||:|||.||
  Fly   529 KWKFFKGGLNIIDLLAILPYFVSLFLLETNKNATDQFQDVRRVVQVFRIMRILRILKLARHSTGL 593

Mouse   338 QILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADDPSSGFNSIPDAFWWAVVTMTTVGYGD 402
            |.||.||:.|.:|||||:.||.:||::|||..||||.|:..:.|.|||:.||||.:|||||||||
  Fly   594 QSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEKDTKFVSIPETFWWAGITMTTVGYGD 658

Mouse   403 MHPVTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEGEEQAQYMHVGSCQHLSSSAEE 467
            ::|.|..||::|::|.|.|||.||||:|:||:||..||..:...|:..:            ..|.
  Fly   659 IYPTTALGKVIGTVCCICGVLVIALPIPIIVNNFAEFYKNQMRREKALK------------RREA 711

Mouse   468 LRKARSNSTLSKSEYMVIEEGGMNHSAFPQTPFKTGNSTATCTTNNNPNSCVNIKKIFTDV 528
            |.:|:...::....::.:::..............||..|..........|..||.:...||
  Fly   712 LDRAKREGSIVSFHHINLKDAFAKSMDLIDVIVDTGKQTNVVHPKGKRQSTPNIGRQTLDV 772

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kcna3NP_032444.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..32 14/48 (29%)
BTB 59..153 CDD:197585 31/118 (26%)
BTB_2 59..150 CDD:280393 31/115 (27%)
Ion_trans 243..443 CDD:278921 96/199 (48%)
Ion_trans_2 357..434 CDD:285168 45/76 (59%)
Selectivity filter. /evidence=ECO:0000250 397..402 4/4 (100%)
PDZ-binding. /evidence=ECO:0000250 526..528 0/1 (0%)
ShabNP_001189037.1 BTB 309..416 CDD:197585 30/111 (27%)
BTB_2 309..408 CDD:280393 30/103 (29%)
Ion_trans 501..700 CDD:278921 96/202 (48%)
Ion_trans_2 613..696 CDD:285168 48/82 (59%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.810

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