DRSC/TRiP Functional Genomics Resources

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Protein Alignment Jarid2 and Kdm5

DIOPT Version :10

Sequence 1:NP_068678.1 Gene:Jarid2 / 16468 MGIID:104813 Length:1234 Species:Mus musculus
Sequence 2:NP_523486.1 Gene:Kdm5 / 33837 FlyBaseID:FBgn0031759 Length:1838 Species:Drosophila melanogaster


Alignment Length:990 Identity:245/990 - (24%)
Similarity:397/990 - (40%) Gaps:246/990 - (24%)


- Green bases have known domain annotations that are detailed below.


Mouse   375 ISGKTESSNAKTRKQVLSLGGASKSTGPAASGLKASSRLNPKSCTKEVGGRQLR------EGLRN 433
            :|.|||:.|.....   |.||...|...:..|..|:....|        .|:||      .|..:
  Fly     1 MSAKTEADNTTAAN---SGGGGVGSGTSSGGGASANGTATP--------ARRLRTRNSTGNGTNS 54

Mouse   434 SKRRLEEAQQVDKPQSPPKKMKGVAGNAEAPGKKASAASGEKSLLNGHVKKEVPERSLERNRPKR 498
            ....::::...|:|.:|.........:..||...:.|.            .|.|..|:..|....
  Fly    55 GSESVKKSNANDEPSTPVTPAGATGSHTHAPPGISPAV------------MERPMPSVPMNHASS 107

Mouse   499 A-AAGKNMLGKQAHGKTEGTPCENRST--SQPESSHKPHDPQGKPEKGSGKSGWAAMDEIPVLRP 560
            : :|.|.......|......|..::.:  :||.||:|  ..|||.|    :..:....|.||.||
  Fly   108 SVSASKKYHNSCPHPTPTPAPTGHKKSVHTQPHSSNK--FDQGKNE----EFHFDTPPECPVFRP 166

Mouse   561 SAKEFHDPLIYIESVRAQVEKYGMCRVIPPPDWRPECKLN-DEMRFVTQIQHIHKLGRRWGPNVQ 624
            :.:||.:||.||..:|:..||.|:.:::||..|.|...:: |::|||.::|.:::|..:....:.
  Fly   167 TTEEFKNPLAYISKIRSIAEKCGIAKILPPATWSPPFAVDVDKLRFVPRVQRLNELEAKTRVKLN 231

Mouse   625 RLACIKKHLRSQGITMDELPLIGGCELDLACFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQ 689
            .|..|.|....||.:: ::|::....|||....|::.|.|||:|.|..:||.|:|:.::.| :::
  Fly   232 FLDQIAKFWELQGSSL-KIPMVERKALDLYTLHRIVQEEGGMEQTTKDRKWAKVANRMQYP-SSK 294

Mouse   690 DRLAKLQEAYCQYLLSYDSLSPEEHRRLEKEVLMEKEILEKRKGP-------------LEGHTES 741
            ...|.|:..|.:.|..:             ||....::|    ||             ||....:
  Fly   295 SVGATLKAHYERILHPF-------------EVYTSGKVL----GPTPTSSGSGSTPVKLEDGGGT 342

Mouse   742 DHHKFHSLP-----------------RFEPKN---GLVHGVTPRNG------FRSKLKE------ 774
            | :|.|.:|                 ||...|   || .||||...      .:::.||      
  Fly   343 D-YKAHEIPTRQQIAPPNETNTRRSKRFGNSNASCGL-SGVTPTTKPSAGVFVKTETKEEFKRDL 405

Mouse   775 --------VGRAPLKTG---RRRLFAQEK-----------------EVVKEEEEDKGVL------ 805
                    .|.:||.||   ..|..:|:|                 .:....:.::.:|      
  Fly   406 LSSFNAVNSGGSPLATGTTANTRGASQKKGGEPPALIVDPLMKYICHICNRGDVEESMLLCDGCD 470

Mouse   806 NDFH-------------------KCIYK--------------GRSVSLTTFYRTARNIMNMCFSK 837
            :.:|                   :|:.:              .|..:|..|.:.|.......|.|
  Fly   471 DSYHTFCLLPPLTSIPKGEWLCPRCVVEEVSKPQEAFGFEQAEREYTLQQFGQMADQFKQEYFRK 535

Mouse   838 --EPAPAE-IEQEYWRLVEEKDCHVAVHCG-KVDTNTHGSGFPVGKS-------EPFSRHGWNLT 891
              ...|.| :|:|:||:|...|..|.|..| .:.|..||||||...|       :.::...|||.
  Fly   536 PVHLVPTEMVEREFWRIVSSIDEDVTVEYGADLHTMDHGSGFPTKSSLYLLPGDQEYAESSWNLN 600

Mouse   892 VLPNNTGSILRHLGA-VPGVTIPWLNIGMVFSTSCWSRDQNHLPY-IDYLHTGADCIWYCIPAEE 954
            .||....|||.|:.| :.|:..||:.:||.|:..|| .:::|..| |:|||.|....||.:|...
  Fly   601 NLPLLEDSILGHINADISGMNAPWMYVGMCFAAFCW-HNEDHWSYSINYLHWGEPKTWYGVPGSC 664

Mouse   955 ENKLE---------------DVVHTLLQGNGTPGLQMLESNVMISPEVLCKKGIKVHRTVQQSGQ 1004
            ..:.|               |::|.|:              .:::|.:|....:.|.||.|.:|:
  Fly   665 AEQFEETMKQAAPELFSSQPDLLHQLV--------------TIMNPNILMNNRVPVFRTDQHAGE 715

Mouse  1005 FVVCFPGSFVSKVCCGYNVSETVHFATTQWTSMGFETAK--EMKRRHIAKPFSMEKLLYQIAQAE 1067
            ||:.||.::.:....|||.:|.|:||...|..||.|...  .|.||...  ||.::|:.::|...
  Fly   716 FVITFPRAYHAGFNQGYNFAEAVNFAPADWLKMGRECVNHYSMLRRFCV--FSHDELVCKMALEP 778

Mouse  1068 AKKENGPTLSTISAL-LDELRDTELRQRRLLFEAGLHSSARYGSHDGNSTVADGKKKPRKWLQLE 1131
            ||...|  ::|...: :.|:.|||.:.|:.|.|.|:..:.|                 |.:..:.
  Fly   779 AKLTFG--IATACYIDMAEMVDTEKKLRKSLLEWGVTRAER-----------------RAFELVN 824

Mouse  1132 TSERRCQICQHLCYLSMVVQE-NENVVFCLECALRHVEKQKSCRGLK--LMYRYDEEQIISLVNQ 1193
            ..||.||.|...|:||.|..| |:.::.|    |||......|...|  |:|||..:::..::.:
  Fly   825 DDERHCQECNTTCFLSAVACECNDKLIVC----LRHYTVLCGCAPEKHTLIYRYTLDEMPLMLQK 885

Mouse  1194 ICGKVSGKHGGIENC 1208
            :..|.......:..|
  Fly   886 LKVKAHSFERWLSRC 900

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Jarid2NP_068678.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..22
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 68..150
Nuclear localization signal. /evidence=ECO:0000269|PubMed:12890668 104..110
Sufficient for interaction with the PRC2 complex. /evidence=ECO:0000250|UniProtKB:Q92833 141..170
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 169..339
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 354..548 39/181 (22%)
JmjN 554..595 CDD:128818 18/40 (45%)
ARID_JARD2 618..729 CDD:350634 27/110 (25%)
GSGFP motif 872..876 3/3 (100%)
JmjC 914..1029 CDD:396791 36/130 (28%)
zf-C5HC2 1137..1190 CDD:460750 19/55 (35%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1206..1234 1/3 (33%)
Kdm5NP_523486.1 JmjN 160..201 CDD:128818 18/40 (45%)
ARID_JARID 226..312 CDD:350628 25/100 (25%)
PHD1_Lid_like 450..495 CDD:277078 2/44 (5%)
JmjC 624..740 CDD:396791 36/130 (28%)
zf-C5HC2 830..882 CDD:460750 19/55 (35%)
PLU-1 896..1231 CDD:462475 1/5 (20%)
PHD2_KDM5A 1295..1351 CDD:277079
PHD3_KDM5A_like 1755..1805 CDD:277083
Blue background indicates that the domain is not in the aligned region.

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