DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Itsn1 and Cip4

DIOPT Version :9

Sequence 1:XP_006522994.1 Gene:Itsn1 / 16443 MGIID:1338069 Length:1743 Species:Mus musculus
Sequence 2:NP_001097501.1 Gene:Cip4 / 38534 FlyBaseID:FBgn0035533 Length:665 Species:Drosophila melanogaster


Alignment Length:688 Identity:132/688 - (19%)
Similarity:243/688 - (35%) Gaps:214/688 - (31%)


- Green bases have known domain annotations that are detailed below.


Mouse   446 REEERRKEIERREAAKRELERQRQLE-WERNRRQELLNQRNKEQ--------------EGTVVLK 495
            |.....|..|...:|:.........| |::|....:...|..:.              |.....|
  Fly    45 RSSSNNKLAESENSAQNSNNMSWGTELWDQNENLAIHTNRGIDALDKFANFLRDRVAIETEYAGK 109

Mouse   496 ARRKTLEFELEALNDKKHQLEGKLQDIRC---------RLATQRQEIESTNKSRELR-IAEITHL 550
            .||....::.:    ||.:.:.:...::.         .||.||   |..::|.:|: ||.:|.|
  Fly   110 LRRLVKNYQPK----KKEEEDNEFTSVQAFRNLLKEVGDLAGQR---EVVSESLQLQIIAGVTLL 167

Mouse   551 QQQLQESQQMLGRLIPEKQILSD--QLKQ---VQQNSL----------HRDSLLTLKRALEAKEL 600
            .:.|:|.:         |:.|||  .|:|   .|.:||          :|||    ::|:::.:.
  Fly   168 SKTLREER---------KKCLSDGATLQQNLTTQLSSLDRAKRNYEKAYRDS----EKAVDSYKR 219

Mouse   601 ARQQLREQLDEVERETR---SKLQEIDVFNNQ-LKELREIHSKQQLQKQRSLEAA--RLKQKEQE 659
            |...|.....||||...   ||:|:.|...|: ..:|::.::.||......|.:.  ||::.:::
  Fly   220 ADMDLNLSRAEVERYKNVMTSKIQQSDDAKNEYANQLQKTNNLQQQHYSMLLPSVLNRLQELDEK 284

Mouse   660 R------------------------------KSLELEKQKEDAQRRVQE--------RDKQWLEH 686
            |                              |:.|...:|||..:.::.        ||..: |.
  Fly   285 RTRGFREFIVGAADVESSVAPIIARCMEGIVKAGESINEKEDTFKVIERYQSGFTPPRDIPF-ED 348

Mouse   687 VQQEEQPRPRKPHEEDRLKREDSVRKKEAEERAKPEM--------------QDKQSRLFH---PH 734
            :.:.:....:..|..:......::|...:..:.|..:              .|.|...|.   |:
  Fly   349 LSKCDPDSVQDSHYSNSTSNHLTIRGTMSANKLKKRVGIFNIFGSNKNSLTADGQKEDFSDLPPN 413

Mouse   735 QEPAKLATQAPWSTTEKGPLTISAQES--------VKVVYYRALYPFESRSHDEITIQPGDIVMV 791
            |...||..:....|..      .|||:        :|:||             |.....|:.:.|
  Fly   414 QRRKKLQAKIAELTQN------IAQETKARDGLMKMKIVY-------------EANSSLGNPMTV 459

Mouse   792 KGEWVDESQTGEPGWLGGELKGKTGWFPANYAEKIPENEVPTPAKPVTDLTSAP-APKLALRETP 855
            :|:..:.....|.  |..:||...|     :.||  .::|||       .||:| |.:..|:...
  Fly   460 EGQLNESEHKLEK--LKVDLKKYQG-----FLEK--ASQVPT-------ATSSPQASRNQLQNGH 508

Mouse   856 APLPVTSSEPSTTPNNWADFSSTWPSSSNEKPETDNWDTWAAQPSLTVPSAGQLRQRSAFTPATA 920
            .    ||...:.:.::..|.....|..:.....:|:.|..|     .:.:........:.:|.:.
  Fly   509 R----TSRHSNGSADDHHDDGDDQPDDAGSLSRSDSEDNVA-----QIQNGHNNNNNGSASPESG 564

Mouse   921 TGSSPSPVLGQGE----------------KVEGL----QAQALYPWRAKKDNHLNFNKSDVITVL 965
            .|:|.:.:.|.|:                :||.|    :.:||||:.|..:..:..::.:.:.|:
  Fly   565 LGTSHTSLPGSGQGSANENAIGEDTYYETEVETLNPVGKCRALYPFEASSEGSIPMSEGEELQVI 629

Mouse   966 E--QQDMW-----------WFGEVQGQKGWFPKSYVKL 990
            |  |.|.|           |      .:|:.|.||:::
  Fly   630 EIDQGDGWTRVRRENNSNGW------DEGFVPTSYIEI 661

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Itsn1XP_006522994.1 EH 39..132 CDD:197477
PLN02983 <155..226 CDD:215533
EH 238..333 CDD:197477
PTZ00121 <355..739 CDD:173412 74/393 (19%)
SH3 766..825 CDD:388381 10/58 (17%)
INTAP 825..939 CDD:374674 24/134 (18%)
SH3_Intersectin1_2 939..990 CDD:212922 15/63 (24%)
SH3_Intersectin1_3 1028..1079 CDD:212924
SH3_Intersectin1_4 1096..1160 CDD:212926
SH3_Intersectin1_5 1180..1233 CDD:212928
RhoGEF 1260..1443 CDD:238091
PH_13 1462..1615 CDD:374702
C2_Intersectin 1604..1738 CDD:176021
Cip4NP_001097501.1 F-BAR_CIP4-like 69..319 CDD:153337 55/269 (20%)
HR1_CIP4-like 412..488 CDD:212009 22/103 (21%)
SH3_CIP4-like 603..661 CDD:212844 15/63 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2056
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.030

Return to query results.
Submit another query.