DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Itgb5 and Itgbn

DIOPT Version :9

Sequence 1:NP_034710.2 Gene:Itgb5 / 16419 MGIID:96614 Length:816 Species:Mus musculus
Sequence 2:NP_001303333.1 Gene:Itgbn / 35368 FlyBaseID:FBgn0010395 Length:799 Species:Drosophila melanogaster


Alignment Length:756 Identity:245/756 - (32%)
Similarity:369/756 - (48%) Gaps:60/756 - (7%)


- Green bases have known domain annotations that are detailed below.


Mouse    33 ATSCEECLLIHPKCAWCS-KEYFGNPRSITSRCDLKANLIRNGC-EGEIESPASSTHVLRNLPLS 95
            |.|||.||..|.:||||: |||     .:..||..:..|:...| |.:|........||::.||.
  Fly    36 ADSCERCLSAHLECAWCTDKEY-----QVGYRCLSRRQLLNYNCSETDIYENQPVLDVLQDKPLK 95

Mouse    96 SKGSSATGSDVIQMTPQEIAVSLRPGEQTTFQLQVRQVEDYPVDLYYLMDLSLSMKDDLENIRSL 160
               ...|....:|:|||...:.|..|.....:|..|...:.|:|||.||||:.:|:||.:.:..|
  Fly    96 ---DYETSDQAVQVTPQRAYLKLVKGNTQRMKLSYRTARNNPLDLYVLMDLTWTMRDDKKTLEEL 157

Mouse   161 GTKLAEEMRKLTSNFRLGFGSFVDKDISPFSYTAPRYQTNPCIGYKLFPNCVPSFGFRHLLPLTD 225
            |.:|::.::.||.|:|||||||.||...|.  ..|:::.|||...:  ..|.|::|:||.|.|||
  Fly   158 GAQLSQTLKNLTGNYRLGFGSFADKPTLPM--ILPQHRENPCAAER--ATCEPTYGYRHQLSLTD 218

Mouse   226 RVDSFNEEVRKQRVSRNRDAPEGGFDAVLQAAVCKEKIGWRKDALHLLVFTTDDVPHIALDGKLG 290
            .:.:|...|...:::.|.|..|||.||::|..||.::|||::.|..:::..||...|:|.||.|.
  Fly   219 DIPAFTSAVANSKITGNLDNLEGGLDALMQVIVCTKEIGWKEQARKVVILVTDGFMHLAGDGLLA 283

Mouse   291 GLVQPHDGQCHLNEANEYTASNQMDYPSLALLGEKLAENNINLIFAVTKNHYMLYKNFTALIPGT 355
            |::|.:|.|||||:|.|||.|...|||||..:..:|....||:|||||:.....|...:||:...
  Fly   284 GIIQRNDKQCHLNKAGEYTGSLNYDYPSLEEIYRELLRRKINVIFAVTEEVVSSYWELSALMKEI 348

Mouse   356 T-VEILHGDSKNIIQLIINAYSSIRAKVELSVWDQPEDLNLFFTATCQDGISYPGQRK---CEGL 416
            : |:||..||.||::||..:|.|:..:.:.:. :.|:.:::.:...|  |..:|..:|   |..:
  Fly   349 SYVDILSADSSNILELIKKSYESLIKRTQFAD-NSPDFIDMAYYTDC--GGQFPSLQKRNYCNNV 410

Mouse   417 KIGDTASFEVSVEARSCPGRQA-AQSFTLRPVGFRDSLQVEVAYNCTCGCSTGLEPNSAR----C 476
            .:|....|.|.|..:..|..|. .....:......:.:.::|.....|.|....:|.:..    |
  Fly   411 TLGKQIDFYVDVTLKKYPDNQVYTHKIRVEETSLSEFMDLDVELQRPCPCQETPDPENEEGRFLC 475

Mouse   477 SGNGTYTCGLCECDPGYLGTRCEC-QEGENQSGYQNL---CRE-----AEGKPLCSGRGECSCNQ 532
            ...|...||:||||.|:.||.|.| .:..|.:..:.|   ||:     :..:.:||..|:|.|..
  Fly   476 DYKGYLYCGMCECDEGWTGTYCNCPTDATNVTSNEALLQKCRQPFSDKSTSELVCSNHGDCDCGT 540

Mouse   533 CSCFESEFGRIYGPFCEC-DSFSCARNKGVLCSGHGECHCGECKCHAGYIGDNCNCSTDVSTCRA 596
            |.|...    ..|||||| :...|....       .:|.||:|.|..|:.|..|||..|...|..
  Fly   541 CLCDPG----YTGPFCECRECLDCDEKL-------ADCFCGQCVCKYGWSGSKCNCDGDTDACVG 594

Mouse   597 KDGQICSDRGRCVCGQCQCTEPGAFGETCEKCPTCPD-ACSSKRDCVECLLLHQ---GKPDNQTC 657
            ..|:|||:||.|.|.:|||.|| ..|:.||..|...: .|.....||.||:..:   |..:|.|.
  Fly   595 PTGEICSERGTCQCEECQCEEP-YLGKFCEIDPEKDNKLCLFYEPCVTCLIEQKQGMGVCENLTE 658

Mouse   658 HHQCKDEVITWVDTIV-----KDDQEAVLCFYKTAKDCVMMFSYTELPNGRSNLTVLREPECGSA 717
            .....|...|:....|     :.||..|....|....|...|.|..:.:  ||...::..:| ..
  Fly   659 ICSSLDRQETYPYNFVHELDPEQDQCLVRLVNKHGIQCDSFFVYQVIDH--SNFLTIQAVDC-EP 720

Mouse   718 PNAMTILLAVVGSILLIGMALLAIWKLLVTIHDRREFAKFQ 758
            |:.:.::..:....||||:.::.|....:...|.||:|||:
  Fly   721 PDYVALVGYISAFTLLIGLLIIFIILWYIRAKDAREYAKFE 761

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Itgb5NP_034710.2 Integrin_beta 35..463 CDD:278776 148/434 (34%)
Cysteine-rich tandem repeats 465..630 61/178 (34%)
Integrin_B_tail 635..718 CDD:285239 21/90 (23%)
Integrin_b_cyt 745..>759 CDD:285884 6/14 (43%)
ItgbnNP_001303333.1 INB 38..460 CDD:197563 149/436 (34%)
EGF_2 524..552 CDD:285248 9/31 (29%)
Integrin_b_cyt 748..785 CDD:285884 6/14 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167850269
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1226
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D223415at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100678
Panther 1 1.100 - - O PTHR10082
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.750

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