DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Itgb2 and Itgbn

DIOPT Version :9

Sequence 1:NP_032430.2 Gene:Itgb2 / 16414 MGIID:96611 Length:770 Species:Mus musculus
Sequence 2:NP_001303333.1 Gene:Itgbn / 35368 FlyBaseID:FBgn0010395 Length:799 Species:Drosophila melanogaster


Alignment Length:824 Identity:262/824 - (31%)
Similarity:393/824 - (47%) Gaps:103/824 - (12%)


- Green bases have known domain annotations that are detailed below.


Mouse     8 LLALAGLFFL---------------GSAVSQECTKYKVSSCRDCIQSGPGCSWCQKLNFTGPGEP 57
            :.:|.|..||               ..::..:|.  ...||..|:.:...|:||     |.....
  Fly     1 MTSLGGRAFLWIYLVFLIAEISHSDADSIDDQCR--HADSCERCLSAHLECAWC-----TDKEYQ 58

Mouse    58 DSLRCDTRAQLLLKGCPADDIMDPRSIAN-------PEFDQRGQRKQLSPQKVTLYLRPGQAAAF 115
            ...||.:|.|||...|...||.:.:.:.:       .:::...|..|::||:..|.|..|.....
  Fly    59 VGYRCLSRRQLLNYNCSETDIYENQPVLDVLQDKPLKDYETSDQAVQVTPQRAYLKLVKGNTQRM 123

Mouse   116 NVTFRRAKGYPIDLYYLMDLSYSMLDDLNNVKKLGGDLLQALNEITESGRIGFGSFVDKTVLPFV 180
            .:::|.|:..|:|||.||||:::|.||...:::||..|.|.|..:|.:.|:|||||.||..||.:
  Fly   124 KLSYRTARNNPLDLYVLMDLTWTMRDDKKTLEELGAQLSQTLKNLTGNYRLGFGSFADKPTLPMI 188

Mouse   181 NTHPEKLRNPCPNKEKACQPPFAFRHVLKLTDNSNQFQTEVGKQLISGNLDAPEGGLDAIMQVAA 245
              .|:...|||..:...|:|.:.:||.|.|||:...|.:.|....|:||||..||||||:|||..
  Fly   189 --LPQHRENPCAAERATCEPTYGYRHQLSLTDDIPAFTSAVANSKITGNLDNLEGGLDALMQVIV 251

Mouse   246 CPEEIGWRNVTRLLVFATDDGF-HFAGDGKLGAILTPNDGRCHL-EDNMYKRSNEFDYPSVGQLA 308
            |.:||||:...|.:|....||| |.||||.|..|:..||.:||| :...|..|..:||||:.::.
  Fly   252 CTKEIGWKEQARKVVILVTDGFMHLAGDGLLAGIIQRNDKQCHLNKAGEYTGSLNYDYPSLEEIY 316

Mouse   309 HKLSESNIQPIFAVTKKMVKTYEKLTEIIPK-SAVGELSDDSSNVVQLIKNAYYKLSSRV-FLDH 371
            .:|....|..|||||:::|.:|.:|:.::.: |.|..||.||||:::|||.:|..|..|. |.|:
  Fly   317 RELLRRKINVIFAVTEEVVSSYWELSALMKEISYVDILSADSSNILELIKKSYESLIKRTQFADN 381

Mouse   372 STLPDTLKVTYDSFCSNGASSIGKSRGDCDGVQINNPVTFQVKVMASECIQEQSFV----IRALG 432
            |  ||.:.:.|.:.|.....|:.| |..|:.|.:...:.|.|.|...:....|.:.    :....
  Fly   382 S--PDFIDMAYYTDCGGQFPSLQK-RNYCNNVTLGKQIDFYVDVTLKKYPDNQVYTHKIRVEETS 443

Mouse   433 FTDTVTVQVRPQCECQCR---DQSREQS--LCGGKGVMECGICRCESGYIGKNCECQTQG---RS 489
            .::.:.:.|..|..|.|:   |...|:.  ||..||.:.||:|.|:.|:.|..|.|.|..   .|
  Fly   444 LSEFMDLDVELQRPCPCQETPDPENEEGRFLCDYKGYLYCGMCECDEGWTGTYCNCPTDATNVTS 508

Mouse   490 SQELERNCR-----KDNSSIVCSGLGDCICGQCVCHTSDVPNKEIFGQYCEC-DNVNCERYNSQV 548
            ::.|.:.||     |..|.:|||..|||.||.|:|      :....|.:||| :.::|:      
  Fly   509 NEALLQKCRQPFSDKSTSELVCSNHGDCDCGTCLC------DPGYTGPFCECRECLDCD------ 561

Mouse   549 CGGSDRGSCNCGKCSCKPGYEGSACQCQRSTTGCLNARLVECSGRGHCQCNRCICDEGYQPPMCE 613
               .....|.||:|.||.|:.||.|.|...|..|:......||.||.|||..|.|:|.|....||
  Fly   562 ---EKLADCFCGQCVCKYGWSGSKCNCDGDTDACVGPTGEICSERGTCQCEECQCEEPYLGKFCE 623

Mouse   614 DCPSCGSHCRDN-----HTSCAECL---KFDKGPFEKNCSVQCAGMTLQ-TIPL--------KKK 661
            ..|.     :||     :..|..||   |...|..| |.:..|:.:..| |.|.        ::.
  Fly   624 IDPE-----KDNKLCLFYEPCVTCLIEQKQGMGVCE-NLTEICSSLDRQETYPYNFVHELDPEQD 682

Mouse   662 PCKER--DSEG--CWITYTLQQKDGRNIYNIHVEDSLECVKGPNVAAIVGGTVVGVVLIGVLLLV 722
            .|..|  :..|  |...:..|..|..|...|   .:::| :.|:..|:||......:|||:|::.
  Fly   683 QCLVRLVNKHGIQCDSFFVYQVIDHSNFLTI---QAVDC-EPPDYVALVGYISAFTLLIGLLIIF 743

Mouse   723 IWKALTHLTDLREYRRFEKEKLKSQWNNDNPLFKSATTTVMNPK 766
            |........|.|||.:||::: |:....:||:::........||
  Fly   744 IILWYIRAKDAREYAKFEEDQ-KNSVRQENPIYRDPVGRYEVPK 786

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Itgb2NP_032430.2 Integrin_beta 32..447 CDD:278776 150/429 (35%)
Cysteine-rich tandem repeats 449..617 63/181 (35%)
Integrin_B_tail 626..700 CDD:285239 20/89 (22%)
Integrin_b_cyt 727..767 CDD:285884 11/40 (28%)
ItgbnNP_001303333.1 INB 38..460 CDD:197563 151/431 (35%)
EGF_2 524..552 CDD:285248 12/33 (36%)
Integrin_b_cyt 748..785 CDD:285884 9/37 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1226
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D223415at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100678
Panther 1 1.100 - - O PTHR10082
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
76.780

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