DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Itgal and if

DIOPT Version :9

Sequence 1:NP_001240801.1 Gene:Itgal / 16408 MGIID:96606 Length:1162 Species:Mus musculus
Sequence 2:NP_001162777.1 Gene:if / 32661 FlyBaseID:FBgn0001250 Length:1396 Species:Drosophila melanogaster


Alignment Length:1174 Identity:274/1174 - (23%)
Similarity:425/1174 - (36%) Gaps:375/1174 - (31%)


- Green bases have known domain annotations that are detailed below.


Mouse    10 LLLLGLQLFAKAWSYNLDTRPTQSFLAQAGRHFGYQVL-----------QIEDGVVVGAP----- 58
            |||:.:    .|..||:|......|...:...||:.:.           |....::||||     
  Fly    22 LLLIAM----SAHGYNIDLPSYVRFRQSSNSMFGFSIAMHKGRSGFYGNQNNVSLIVGAPKFDTS 82

Mouse    59 --GEG-DNTGGLYHCRTSSEFCQ--PVSLHGSNH----------TSKYLGMTLATDAAKGSLLAC 108
              .:| ...||::.|..:.:.|:  |....|:|.          :.::||.|:||......::||
  Fly    83 RYQQGVTEAGGVFKCSLNDDDCKLVPFDSKGNNRNVDKEVVDRKSYQWLGATVATGRDSDLVVAC 147

Mouse   109 DPGLSRTCDQNTYLSGLCYLFPQSLEGPMLQNRPAYQECMKGKVDLVFLFDGSQSLDRKDFEKIL 173
            .|.               |:|.........:..|         |...|                 
  Fly   148 APR---------------YVFHTMTPSRAFRIDP---------VGTCF----------------- 171

Mouse   174 EFMKDVMRKLSNTSYQFAAVQFSTDCRTEFTFLDYVKQNKNPDVLLGSVQPMFLLTNTFRAINYV 238
                        ||:.|......:.|||  ....|.:|        ||.|..|     ..|||..
  Fly   172 ------------TSHNFEEFYEVSPCRT--NNWGYHRQ--------GSCQAGF-----SAAINGN 209

Mouse   239 VAHVFKEESGARPDATKVLVIITDGEASDK---------GNISAAHDITRYIIGIGKHFVSVQKQ 294
            .:.:|....|:.....:...|..|.:...|         |.::::||:||               
  Fly   210 GSRLFIGAPGSWYWQGQTYSIPPDAKFPFKPPLYQPFGTGGMASSHDVTR--------------- 259

Mouse   295 KTLHIFASEPVEEFVKILDTFEKLKDLFTDLQRRIYAIEGTNRQDLTSFNMELSSSGISADLSKG 359
                     |..:   :..|.|                                |:.::.|...|
  Fly   260 ---------PENQ---VFSTSE--------------------------------SASVNDDSYLG 280

Mouse   360 HAVVGAVGAKDWAGGFLDLREDLQGATFVGQEPLTSDVRGGYLGYTVAWMTSRSSRPLLAAGAPR 424
            :::|    ..|:.|   |..||:.    :|..      |||.|                      
  Fly   281 YSMV----TGDFDG---DRSEDVA----IGMP------RGGNL---------------------- 306

Mouse   425 YQHVGQVLLFQAPEAGGRWNQTQ--KIEGTQIGSYFGGELCSVDLDQDGEAELLLIGAPLFF--- 484
               ||::::       .|||...  .|.|.|||.|||..|.:.|:|.|| .:.||||||::.   
  Fly   307 ---VGRIVV-------NRWNMANIFNITGRQIGEYFGYSLATSDVDGDG-LDDLLIGAPMYTDPD 360

Mouse   485 ---GEQRGGRVFTYQRRQSLFEMVSELQGDP-------------GY-PLGRFGAAITALTDINGD 532
               |:...|||:..            |||.|             || ..||||.|:|.|.|:|||
  Fly   361 NVEGKYDVGRVYIL------------LQGGPTEEKRWTTEHIRDGYHSKGRFGLALTTLGDVNGD 413

Mouse   533 RLTDVAVGAPL---EEQGAVYIFNGKPGGLSPQPSQRIQGAQVFPGI---RWFGRSIHGVKDLGG 591
            ...|.|||||.   |.:|.||||:|.|.|...:|||.|:..|:..|.   |.||.::.|..|:.|
  Fly   414 GYGDFAVGAPYDGPEGRGVVYIFHGSPMGPLAKPSQIIKSEQLVEGAPYPRTFGFALSGGLDMDG 478

Mouse   592 DRLADVVVGA--EGRVVVLSSRPVVDVVTELSFSPEE--IPVHEVECSYSAREEQKHGVKLKACF 652
            :...|:.|||  ..:|.:..||||..|..|.||:...  |.:.:..|......::...:.|..|:
  Fly   479 NTYPDLAVGAYSSDQVFIFKSRPVAAVNAETSFASNSKLISLDDRSCQLVRDHKKVPCMLLTTCW 543

Mouse   653 RIKPLTPQFQGRLL-ANLSYTLQ--LDGHRMRSRGLF---PDGSHELSGNTSIT-PDKSCLDFHF 710
                   .:.||.| ..|.:.:.  ||..::.:..:|   .:|.:..:....:. ..|.||:...
  Fly   544 -------SYTGRYLPEQLDFDVSWLLDAKKLLNPRMFFLRDEGKNIRNQTIRLNYGQKYCLNETV 601

Mouse   711 HFPICIQDLISPINVSLNFSLLEEEGTPRDQKVGRAMQPILRPSIH-----TVTKEIPFEKNCGE 770
            :....:||.::|:.|...::|  ....|.|..| |..:.||.|.|.     .:...|..:||||.
  Fly   602 YLLDKVQDKLTPLEVEARYNL--RSSRPLDPMV-RHRRSILEPVIDQNREIVLRDAINIQKNCGP 663

Mouse   771 DKKCEANLTLSSPARSGPLRLMSSASLAVEWTLSNSGEDAYWVRLDLDFPRGLSFRKVEMLQPHS 835
            |..||.:|.|........| ..|...|.:|..:||:.|||:.....:..|..|.|||::.|....
  Fly   664 DNICEPDLKLKVSTVDKYL-FGSPEPLVIEVFISNTNEDAFEAAFYMVTPPDLQFRKLQQLGEKK 727

Mouse   836 RMPVSCEELTEGSSLLTKTLKCNVSSPIFKAGQ----EVSLQVMFNTLLNSSWEDFVELNGTVHC 896
            ..|::|...|..::   .||||::.:|: ::|:    ::||........:||::.:.|.|.|   
  Fly   728 DTPITCSPPTPENN---HTLKCDIGNPL-ESGKIAHFKISLVPEEKYGSSSSYDFYWEANST--- 785

Mouse   897 ENENSSLQEDNS---------------AATHIP--VLYPVNILTKEQENSTLYISFTPKGPKTQQ 944
            ..|....:.||.               ..|.:|  .||..:.. ||.||:|......|      |
  Fly   786 NLEKPGSEYDNKIRQSVGIWVDTDLDIKGTSLPDYQLYKADDY-KELENATKEDDIGP------Q 843

Mouse   945 VQHVYQVRIQPSAYDHNMPTL--EALVGVPWPHSE---DPITYTWSVQTDPLVTCHSEDLKRPSS 1004
            |.|:|::|       :|.|::  ||.|.:..|:..   ||:.|.               |.:|.:
  Fly   844 VVHIYEIR-------NNRPSIIEEAEVFIHLPYETIVGDPLMYL---------------LNQPET 886

Mouse  1005 EAEQPCLPGVQFRC-PIVFR-----------REILIQVTGTVELSKEIKASSTLSLCSSLSVSFN 1057
                    |.:.:| .:.|.           ::..:|..|.:..|.::...|     ||.|.|..
  Fly   887 --------GGKIQCDDVAFNEYNLLLDEKLVKKSYLQAQGAIWNSAQVSGQS-----SSSSSSGG 938

Mouse  1058 SSKH 1061
            :|.|
  Fly   939 ASVH 942

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ItgalNP_001240801.1 FG-GAP 5. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 444..504 24/67 (36%)
FG-GAP 6. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 505..561 32/72 (44%)
FG-GAP 7. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 565..625 23/64 (36%)
GFFKR motif 1112..1116
FG-GAP 1. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 28..79 13/71 (18%)
FG-GAP 2. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 80..138 12/67 (18%)
FG-GAP 3. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 336..387 9/50 (18%)
FG-GAP 4. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 390..443 6/52 (12%)
ifNP_001162777.1 Int_alpha 46..110 CDD:214549 13/63 (21%)
Int_alpha 275..>316 CDD:214549 16/89 (18%)
Int_alpha 398..451 CDD:214549 29/52 (56%)
Int_alpha 466..>497 CDD:214549 10/30 (33%)
Integrin_alpha2 499..893 CDD:285619 107/448 (24%)
DUF2756 <1120..1178 CDD:298627
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167832049
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3637
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.740

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