DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Itga4 and if

DIOPT Version :9

Sequence 1:NP_034706.3 Gene:Itga4 / 16401 MGIID:96603 Length:1032 Species:Mus musculus
Sequence 2:NP_001162777.1 Gene:if / 32661 FlyBaseID:FBgn0001250 Length:1396 Species:Drosophila melanogaster


Alignment Length:1056 Identity:272/1056 - (25%)
Similarity:455/1056 - (43%) Gaps:187/1056 - (17%)


- Green bases have known domain annotations that are detailed below.


Mouse    22 LLLYFGVPTGHSYNLDPENALLYQGPSGTLFGYSVVLHS-----HGSKR--WLIVGAP---TASW 76
            |:|.....:.|.||:|..:.:.::..|.::||:|:.:|.     :|::.  .||||||   |:.:
  Fly    20 LILLLIAMSAHGYNIDLPSYVRFRQSSNSMFGFSIAMHKGRSGFYGNQNNVSLIVGAPKFDTSRY 84

Mouse    77 LSNASVVNPGAIYRCGIRKNPNQTCEQLQLGSP-SGEPCGKTCLEERDNQWLGVTLSRQPGENGS 140
              ...|...|.:::|.:.   :..|:.:...|. :.....|..::.:..||||.|::  .|.:..
  Fly    85 --QQGVTEAGGVFKCSLN---DDDCKLVPFDSKGNNRNVDKEVVDRKSYQWLGATVA--TGRDSD 142

Mouse   141 -IVTCGHRWKNIFYMKSDNKL----PTGICYVMPSDLRTELSKRMAPCYKDYTRKFG-ENFASCQ 199
             :|.|..|:  :|:..:.::.    |.|.|:   :....|....::||   .|..:| ....|||
  Fly   143 LVVACAPRY--VFHTMTPSRAFRIDPVGTCF---TSHNFEEFYEVSPC---RTNNWGYHRQGSCQ 199

Mouse   200 AGISSFYTQD--LIVMGAPGSSYWTGTVF-------------------------VYNITTNQYKA 237
            ||.|:....:  .:.:|||||.||.|..:                         .:::|..:.:.
  Fly   200 AGFSAAINGNGSRLFIGAPGSWYWQGQTYSIPPDAKFPFKPPLYQPFGTGGMASSHDVTRPENQV 264

Mouse   238 FVDRQN-QVKFGSYLGYSVGAGHFRSPHTTEVVGGAPQHEQIGKAYIFSIDENELNI--VYEMKG 299
            |...:: .|...||||||:..|.|....:.:|..|.|:    |...:..|..|..|:  ::.:.|
  Fly   265 FSTSESASVNDDSYLGYSMVTGDFDGDRSEDVAIGMPR----GGNLVGRIVVNRWNMANIFNITG 325

Mouse   300 KKLGSYFGASVCAVDLNADGFSDLLVGAPMQST------IREEGRVFVYINSGMGAVMVEMERVL 358
            :::|.|||.|:...|::.||..|||:||||.:.      ..:.|||::.:..|    ..|.:|..
  Fly   326 RQIGEYFGYSLATSDVDGDGLDDLLIGAPMYTDPDNVEGKYDVGRVYILLQGG----PTEEKRWT 386

Mouse   359 VG--SDKY--AARFGESIANLGDIDNDGFEDIAIGAPQE-DDLRGAVYIYNGRVDGISSTYSQRI 418
            ..  .|.|  ..|||.::..|||::.||:.|.|:|||.: .:.||.|||::|...|..:..||.|
  Fly   387 TEHIRDGYHSKGRFGLALTTLGDVNGDGYGDFAVGAPYDGPEGRGVVYIFHGSPMGPLAKPSQII 451

Mouse   419 EGQQISKSL---RMFGQSISGQIDADNNGYVDVAVGAFQSDSAVLLRTRPVVIVEASLSHPESVN 480
            :.:|:.:..   |.||.::||.:|.|.|.|.|:||||:.||...:.::|||..|.|..|...:..
  Fly   452 KSEQLVEGAPYPRTFGFALSGGLDMDGNTYPDLAVGAYSSDQVFIFKSRPVAAVNAETSFASNSK 516

Mouse   481 RTKFD---C----TENGLPSVCMHLTLCFSYKGKEVPGYIVLFYNVS--LDVHRKAESPSRFYFF 536
            ....|   |    ....:|  ||.||.|:||.|:.:|..  |.::||  ||. :|..:| |.:|.
  Fly   517 LISLDDRSCQLVRDHKKVP--CMLLTTCWSYTGRYLPEQ--LDFDVSWLLDA-KKLLNP-RMFFL 575

Mouse   537 SNGTSDVITGSIRVSSSGEKCRTHQAFMRKDVRDILTPIHVEATYHLGHHVITKRNTEEFPP--- 598
            .:...::...:||::...:.|.....::...|:|.|||:.|||.|:|       |::....|   
  Fly   576 RDEGKNIRNQTIRLNYGQKYCLNETVYLLDKVQDKLTPLEVEARYNL-------RSSRPLDPMVR 633

Mouse   599 -----LQPILQQKKEKDVIRKMINFARFCAYEN-CSADLQVSAKVGFLKPYENKTYLAVGSMKTI 657
                 |:|::.|.:| .|:|..||..:.|..:| |..||::  ||..:..|      ..||.:.:
  Fly   634 HRRSILEPVIDQNRE-IVLRDAINIQKNCGPDNICEPDLKL--KVSTVDKY------LFGSPEPL 689

Mouse   658 MLNVSLFNAGDDAYETTLNVQLPTGLYFIKILDLEEKQ---INCEVTESSGIVKLACSLGY-IYV 718
            ::.|.:.|..:||:|....:..|..|.|.|:..|.||:   |.|..........|.|.:|. :..
  Fly   690 VIEVFISNTNEDAFEAAFYMVTPPDLQFRKLQQLGEKKDTPITCSPPTPENNHTLKCDIGNPLES 754

Mouse   719 DRLSRIDISFLLDVSSLSRAHEDLSISVHA-SCENEGELDQVRDNRVTLTIPLRYEVMLTVHGLV 782
            .:::...||.:.:....|.:..|.....:: :.|..|   ...||::..::.:..:..|.:.|..
  Fly   755 GKIAHFKISLVPEEKYGSSSSYDFYWEANSTNLEKPG---SEYDNKIRQSVGIWVDTDLDIKGTS 816

Mouse   783 NPTSFVYGSSEENEPETCMAE-----KLNLTFHVINTGISMAPNVSVKIMVPNSFLPQDDKLFNV 842
            .|...:|.:.:..|.|....|     ::...:.:.|...|:.....|.|.:|...: ..|.|..:
  Fly   817 LPDYQLYKADDYKELENATKEDDIGPQVVHIYEIRNNRPSIIEEAEVFIHLPYETI-VGDPLMYL 880

Mouse   843 LDVQTTTG--QCH---FKHYGRECTFAQQKGIAGTLTD--IVKFLSKTDKRLLYCMKADQHCLDF 900
            |:...|.|  ||.   |..|             ..|.|  :||      |..|....|..:....
  Fly   881 LNQPETGGKIQCDDVAFNEY-------------NLLLDEKLVK------KSYLQAQGAIWNSAQV 926

Mouse   901 LCNFGKMESGKEASVHIQL---EG-RPSILEMDETSSLKFEIKATAFPEPHPKVIELNKDENVAH 961
            ........|...|||||:.   || ...:|..:.|.         |..:..||.:|..:.|:.  
  Fly   927 SGQSSSSSSSGGASVHIEKARGEGFVRGVLVSNSTD---------AGDKLSPKQVEQRRQEDT-- 980

Mouse   962 VFLEGL------HHQR 971
              ||.|      |..|
  Fly   981 --LEALGDASFVHRDR 994

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Itga4NP_034706.3 Int_alpha 48..105 CDD:214549 17/66 (26%)
Int_alpha 303..351 CDD:214549 19/53 (36%)
Int_alpha 366..418 CDD:214549 22/52 (42%)
Int_alpha 429..479 CDD:214549 21/49 (43%)
Integrin_alpha2 463..902 CDD:285619 113/473 (24%)
ifNP_001162777.1 Int_alpha 46..110 CDD:214549 17/68 (25%)
Int_alpha 275..>316 CDD:214549 14/44 (32%)
Int_alpha 398..451 CDD:214549 22/52 (42%)
Int_alpha 466..>497 CDD:214549 15/30 (50%)
Integrin_alpha2 499..893 CDD:285619 103/419 (25%)
DUF2756 <1120..1178 CDD:298627
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167832104
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3637
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.740

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