DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Il12rb2 and sdk

DIOPT Version :9

Sequence 1:NP_032380.1 Gene:Il12rb2 / 16162 MGIID:1270861 Length:874 Species:Mus musculus
Sequence 2:NP_001284756.1 Gene:sdk / 31017 FlyBaseID:FBgn0021764 Length:2265 Species:Drosophila melanogaster


Alignment Length:1178 Identity:215/1178 - (18%)
Similarity:368/1178 - (31%) Gaps:462/1178 - (39%)


- Green bases have known domain annotations that are detailed below.


Mouse    38 APVIPL---------GSAANISCSL--NPKQGCSHYPSSNELI-------LLKFVNDVLVENLHG 84
            ||::.|         |..|.|||..  :|....:...:..:|:       :|: ..|:|:.|:. 
  Fly   499 APIMELPPQNVTALDGKDATISCRAVGSPNPNITWIYNETQLVDISSRVQILE-SGDLLISNIR- 561

Mouse    85 KKVHDHTGHSSTFQVTNLSLGMTLFVC-KLNCSNSQK--------------KPPVP-------VC 127
                              |:...|::| :.|.:.|.|              :|||.       ..
  Fly   562 ------------------SVDAGLYICVRANEAGSVKGEAYLSVLVRTQIIQPPVDTTVLLGLTA 608

Mouse   128 GVEISVGVAPEPPQNISCVQEGEN----------------------------GTVACSWNS--GK 162
            .::..|...|..|.||...:||::                            |:.||...|  |.
  Fly   609 TLQCKVSSDPSVPYNIDWYREGQSSTPISNSQRIGVQADGQLEIQAVRASDVGSYACVVTSPGGN 673

Mouse   163 VTYLKTNYTLQLS-GPNNLTCQK-----------------------QCFSDNRQNCNRL----DL 199
            .|.......::|. .|:|:..::                       ..|...|:..:.|    |.
  Fly   674 ETRAARLSVIELPFPPSNVKVERLPEPQQRSINVSWTPGFDGNSPISKFIIQRREVSELGPVPDP 738

Mouse   200 GIN----LSPDLAESRFIV------------RVTAINDLGNSS-SLPHTFTFLDIVIPLP---PW 244
            .:|    ||...|:.|:|:            ||:|:|.:|..| |.|..      |:.||   |.
  Fly   739 LLNWITELSNVSADQRWILLENLKAATVYQFRVSAVNRVGEGSPSEPSN------VVELPQEAPS 797

Mouse   245 DIRINFLNASGSRGTL--QWED------EGQVVLNQLRYQ--PLNSTSWNMVNATN-AKGKYDLR 298
            ...:.|:.::.|...:  ||:.      .||::...|||:  ..|:..|:..|.|| |:..:.::
  Fly   798 GPPVGFVGSARSMSEIITQWQPPLEEHRNGQILGYILRYRLFGYNNVPWSYQNITNEAQRNFLIQ 862

Mouse   299 DLRPFTEYEFQISSKLHLSGGSWSNWSESLRTR--TPEEEPVGI--------------------- 340
            :|..:.:|..||::..::..|.::..|: ::|:  .||..|..:                     
  Fly   863 ELITWKDYIVQIAAYNNMGVGVYTEGSK-IKTKEGVPEAPPTNVKVEAINSTAARCRWTPPNPQQ 926

Mouse   341 ---------LDIWYMK------QDI---------------------------------------- 350
                     :..|..:      :||                                        
  Fly   927 INGINQGYKIQAWQRRLIDGEWRDIERRMKTVPPSLIDPLAEQTAILGGLEKFTEYNISVLCFTD 991

Mouse   351 ----------------------------DYDRQQISLFWKSLNPSEARGKIL-----HYQVTLQE 382
                                        |...:.:.:.|.   |..|...||     .|||..:.
  Fly   992 PGDGVASSQVAVMTMDDVPDEVTGLHFDDVSDRSVKVLWA---PPRASNGILTGYTVRYQVKDRP 1053

Mouse   383 VTKKT-------------TLQNTTRH----TSWTRV---IPRTGAWTASVSAANSKGASAPTHIN 427
            .|.|:             .||.||.:    .:||||   ||:    ||::.:             
  Fly  1054 DTLKSFNLTADDTELTVNQLQATTHYWFEIVAWTRVGSGIPK----TATIQS------------- 1101

Mouse   428 IVDLCGTGLLAPHQVSAKS-ENMD--NILVTWQPPKKADSAVREYIVEWRALQPGSITKFPPHWL 489
                 |...:.||..:|.: .|::  ::::.:.|....:|::.::.||.:..:  ::|     |.
  Fly  1102 -----GVEPVLPHAPTALALSNIEAFSVVLQFTPGFDGNSSITKWKVEGQTAR--NMT-----WF 1154

Mouse   490 RI----PPDNMSALISENIKPYICYEIRVHALSESQGGCSSIRGDSK-----------HKAPVSG 539
            .|    .|| ...|....:.|:..|.:|:.|        |::.|.||           ...|...
  Fly  1155 TICEINDPD-AETLTVTGLVPFTQYRLRLSA--------SNVVGSSKPSEATKDFQTIQARPKHP 1210

Mouse   540 P-HITAITEKKERLFISWTHIPFPEQRGCILHYRIYWKERDSTAQPELCEIQY--------RRSQ 595
            | ::|......::|.:.|..:...|..|....|.|.:|:...|..    .|:|        ..:.
  Fly  1211 PFNVTVRAMSAQQLRVRWIPLQQTEWYGNPRGYNISYKQLVKTPG----TIKYVPRSVVIEDHTA 1271

Mouse   596 NSHPISSLQPRVTYVLWMTAVTAAGESPQGN-----EREFCPQ-GKANWKAFVISSICIAIITVG 654
            |||.:.||:....|.:.|.|....|.|.:.:     .||..|. |..:.:|...||..: ::..|
  Fly  1272 NSHVLDSLEEWTLYEVKMNACNDVGCSKESDTAVERTREAVPSYGPLDVQANATSSTTV-VVQWG 1335

Mouse   655 TFSIRYFRQ------KAFTLLSTLKPQWYSRTIPDPANSTW----VKKY---------------- 693
            ... |..|.      |.|...:....|...:|||:.|..|.    :|||                
  Fly  1336 EVP-RQHRNGQIDGYKVFYAAADRGQQVLHKTIPNNATFTTTLTELKKYVVYHVQVLAYTRLGNG 1399

Mouse   694 ---------------PILEEKIQLPTDNLLMA---WPTPEEPE-PLIIHEVLYHMIPVVRQPYYF 739
                           |.:...:..|..:|.||   |..|.:|. .::.::|.|.:          
  Fly  1400 ALSTPPIRVQTFEDTPGVPSNVSFPDVSLTMARIIWDVPVDPNGKILAYQVTYTL---------- 1454

Mouse   740 KRGQGFQGYSTS--KQDAMYIANPQATG-----TLTAETR------QLVNLYKVLESRDPDSKLA 791
             .|.....||..  ..|..:.|.....|     :.||:||      ....:|.......|.:...
  Fly  1455 -NGSAMLNYSREFPPSDRTFRATELLPGKYYSFSCTAQTRLGWGKIATALVYTTNNRERPQAPSV 1518

Mouse   792 NLTSPLTV----TPVNYLPSHEGYLPSNIEDLS-----------PHEADPTDSFDLEHQHISLSI 841
            ...|...:    ...::.|..:|:.|.....:.           |...||           |||.
  Fly  1519 PQISRSQIQAHQITFSWTPGRDGFAPLRYYTVEMRENEGRWQPLPERVDP-----------SLSS 1572

Mouse   842 FASSSLRP 849
            |.:..|||
  Fly  1573 FTAVGLRP 1580

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Il12rb2NP_032380.1 Lep_receptor_Ig 28..120 CDD:368845 19/100 (19%)
FN3 240..332 CDD:238020 25/107 (23%)
WSXWS motif 321..325 0/3 (0%)
fn3 438..523 CDD:365830 18/91 (20%)
FN3 536..630 CDD:238020 24/107 (22%)
Box 1 motif 677..685 3/7 (43%)
sdkNP_001284756.1 Ig 71..157 CDD:299845
I-set 72..150 CDD:254352
Ig 172..245 CDD:299845
IG_like 280..356 CDD:214653
Ig 280..343 CDD:299845
IG_like 375..450 CDD:214653
Ig 378..447 CDD:143165
Ig 506..587 CDD:299845 17/100 (17%)
IG_like 506..587 CDD:214653 17/100 (17%)
I-set 592..682 CDD:254352 16/89 (18%)
Ig 595..682 CDD:299845 16/86 (19%)
FN3 686..789 CDD:238020 20/108 (19%)
FN3 798..893 CDD:238020 21/95 (22%)
FN3 901..1005 CDD:238020 4/103 (4%)
fn3 1011..1094 CDD:278470 19/85 (22%)
FN3 1108..1202 CDD:238020 22/109 (20%)
FN3 1210..1308 CDD:238020 22/101 (22%)
fn3 1317..1402 CDD:278470 17/86 (20%)
FN3 1415..1507 CDD:238020 21/102 (21%)
FN3 1513..1608 CDD:238020 15/79 (19%)
fn3 1617..1708 CDD:278470
FN3 1722..1823 CDD:238020
FN3 1828..1920 CDD:238020
FN3 1927..2016 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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