DRSC/TRiP Functional Genomics Resources

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Protein Alignment LMNTD1 and LamC

DIOPT Version :10

Sequence 1:NP_001139200.1 Gene:LMNTD1 / 160492 HGNCID:26683 Length:409 Species:Homo sapiens
Sequence 2:NP_001260974.1 Gene:LamC / 36615 FlyBaseID:FBgn0010397 Length:640 Species:Drosophila melanogaster


Alignment Length:259 Identity:52/259 - (20%)
Similarity:113/259 - (43%) Gaps:40/259 - (15%)


- Green bases have known domain annotations that are detailed below.


Human     5 QDIQEASKAMQNKVHEQEDKNEKQKQREDKLGVYSLVHFSPKMLGSVATTLP-----LSSSNSSG 64
            |::::.:..:..::.|.|:..:.::||.::. :.||.....:|...:|..|.     :....|..
  Fly   322 QNLEDTNAGLNARIRELENLLDTERQRHNQY-IASLEAELQRMRDEMAHQLQEYQGLMDIKVSLD 385

Human    65 MPLGYY--LSSPQISRVTISTTGQLTSKATVGSCSRVENSLDASPFS-----VPK-KQDESPMIG 121
            :.:..|  |...:..|:.|.:.|:.|:.:.:.|..   :.|.||..|     .|. ::..:|.|.
  Fly   386 LEIAAYDKLLCGEERRLNIESPGRPTTDSGISSNG---SHLTASASSRSGRVTPSGRRSATPGIS 447

Human   122 DGEDYFLSLFGDS---KKLTAHSNYTQKTLKYFSMILEEVGQFTSSSLGDVEIAEVNVKGLFVKL 183
                      |.|   ::.|.......:||..:|:        .:::.||:||.|.:|:|.|:||
  Fly   448 ----------GSSAVKRRRTVIDESEDRTLSEYSV--------NAAAKGDLEIIEADVEGRFIKL 494

Human   184 INSSLDKEMAIGDHILQQNVNGQTISLYRFLPNIVMQANSTVTVWAAASEAKHQPPSDFLWKEQ 247
            .|...::....|..:.:  :.|.....::|.....:...::||:|:..:...|.||::.:.|::
  Fly   495 HNKGTEEINLTGWQLTR--IAGDEELAFKFSRGSKVLGGASVTIWSVDAGTAHDPPNNLVMKKK 556

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LMNTD1NP_001139200.1 LTD 163..272 CDD:460003 21/85 (25%)
LamCNP_001260974.1 Filament 45..401 CDD:459643 13/79 (16%)
PRK13922 154..>221 CDD:473155
LTD 474..574 CDD:460003 21/85 (25%)
Blue background indicates that the domain is not in the aligned region.

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