Sequence 1: | NP_001245211.1 | Gene: | LINGO2 / 158038 | HGNCID: | 21207 | Length: | 606 | Species: | Homo sapiens |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001369108.1 | Gene: | Fili / 5740472 | FlyBaseID: | FBgn0085397 | Length: | 789 | Species: | Drosophila melanogaster |
Alignment Length: | 399 | Identity: | 126/399 - (31%) |
---|---|---|---|
Similarity: | 191/399 - (47%) | Gaps: | 41/399 - (10%) |
- Green bases have known domain annotations that are detailed below.
Human 15 LAVVLIFMGSTIGCPARCEC--SAQNKSVSCHRRRLIAIPEGIPIETKILDLSKNRLKSVNPEEF 77
Human 78 ISYPL---LEEIDLSDNIIANVEPGAFNNLFNLRSLRLKGNRLKLVPLGVFTGLSNLTKLDISEN 139
Human 140 KIVILLDYMFQDLHNLKSLEVGDNDLVYISHRAFSGLLSLEQLTLEKCNLTAVPTEALSHLRSLI 204
Human 205 SLHLKHLNI-------------------------NNMPVYAFKRLFHLKHLEIDYWPLLDMMPAN 244
Human 245 SLYGL-NLTSLSVTNTNLSTVPFLAFKHLVYLTHLNLS-YNPISTIEAGMFSDLIRLQELHI-VG 306
Human 307 AQLRTIEPHSFQGLRFLRVLNVSQNLLETLEENVFSSPRALEVLSINNNPLACDCRLLWILQRQP 371
Human 372 TLQFGGQQP 380 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
LINGO2 | NP_001245211.1 | LRRNT | 27..60 | CDD:214470 | 9/34 (26%) |
leucine-rich repeat | 39..57 | CDD:275380 | 3/17 (18%) | ||
LRR 1 | 58..79 | 8/20 (40%) | |||
leucine-rich repeat | 59..82 | CDD:275380 | 8/22 (36%) | ||
LRR_8 | 60..117 | CDD:316378 | 22/59 (37%) | ||
LRR 2 | 82..103 | 9/23 (39%) | |||
leucine-rich repeat | 83..106 | CDD:275380 | 9/22 (41%) | ||
LRR_8 | 106..165 | CDD:316378 | 20/58 (34%) | ||
LRR 3 | 106..127 | 6/20 (30%) | |||
leucine-rich repeat | 107..130 | CDD:275380 | 8/22 (36%) | ||
LRR 4 | 130..151 | 7/20 (35%) | |||
leucine-rich repeat | 131..154 | CDD:275380 | 8/22 (36%) | ||
LRR_5 | 146..276 | CDD:331043 | 43/155 (28%) | ||
LRR 5 | 154..175 | 5/20 (25%) | |||
leucine-rich repeat | 155..178 | CDD:275380 | 6/22 (27%) | ||
LRR 6 | 178..199 | 7/20 (35%) | |||
leucine-rich repeat | 179..202 | CDD:275380 | 9/22 (41%) | ||
LRR 7 | 202..223 | 7/45 (16%) | |||
leucine-rich repeat | 203..250 | CDD:275380 | 17/72 (24%) | ||
LRR 8 | 226..247 | 7/20 (35%) | |||
LRR_8 | 250..309 | CDD:316378 | 20/60 (33%) | ||
LRR 9 | 250..271 | 8/20 (40%) | |||
leucine-rich repeat | 251..274 | CDD:275380 | 8/22 (36%) | ||
LRR 10 | 274..295 | 6/21 (29%) | |||
leucine-rich repeat | 275..298 | CDD:275380 | 7/23 (30%) | ||
LRR_8 | 298..357 | CDD:316378 | 18/59 (31%) | ||
LRR 11 | 298..319 | 8/21 (38%) | |||
leucine-rich repeat | 299..322 | CDD:275380 | 10/23 (43%) | ||
LRR 12 | 322..343 | 5/20 (25%) | |||
leucine-rich repeat | 323..343 | CDD:275380 | 5/19 (26%) | ||
PCC | 327..>391 | CDD:188093 | 21/54 (39%) | ||
I-set | 410..500 | CDD:254352 | |||
Fili | NP_001369108.1 | leucine-rich repeat | 75..97 | CDD:275378 | 9/25 (36%) |
leucine-rich repeat | 98..121 | CDD:275380 | 9/22 (41%) | ||
LRR_8 | 120..180 | CDD:404697 | 20/59 (34%) | ||
leucine-rich repeat | 122..145 | CDD:275380 | 8/22 (36%) | ||
leucine-rich repeat | 146..169 | CDD:275380 | 8/22 (36%) | ||
LRR | <161..>354 | CDD:227223 | 56/194 (29%) | ||
leucine-rich repeat | 170..193 | CDD:275380 | 6/22 (27%) | ||
leucine-rich repeat | 194..217 | CDD:275380 | 9/22 (41%) | ||
leucine-rich repeat | 218..265 | CDD:275380 | 8/47 (17%) | ||
leucine-rich repeat | 266..289 | CDD:275380 | 9/23 (39%) | ||
leucine-rich repeat | 290..313 | CDD:275380 | 8/22 (36%) | ||
leucine-rich repeat | 314..338 | CDD:275380 | 7/23 (30%) | ||
LRR_8 | 337..397 | CDD:404697 | 18/60 (30%) | ||
leucine-rich repeat | 339..360 | CDD:275380 | 8/20 (40%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 1 | 1.050 | 154 | 1.000 | Inparanoid score | I4328 |
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 1 | 1.000 | - | - | mtm8524 | |
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | O | PTHR24373 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
User_Submission | 0 | 0.000 | Not matched by this tool. | |||
4 | 4.060 |