DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hoxd8 and Scr

DIOPT Version :9

Sequence 1:NP_032302.2 Gene:Hoxd8 / 15437 MGIID:96209 Length:289 Species:Mus musculus
Sequence 2:NP_001368995.1 Gene:Scr / 40833 FlyBaseID:FBgn0003339 Length:564 Species:Drosophila melanogaster


Alignment Length:398 Identity:107/398 - (26%)
Similarity:128/398 - (32%) Gaps:166/398 - (41%)


- Green bases have known domain annotations that are detailed below.


Mouse     1 MSSY-FVNPLYSKY------------------------------------------KAAAAAAAA 22
            |||| |||.|.|.|                                          .|.||...|
  Fly     8 MSSYQFVNSLASCYPQQMNPQQNHPGAGNSSAGGSGGGAGGSGGVVPSGGTNGGQGSAGAATPGA 72

Mouse    23 AAAAAAGEAINPTYYDCHFAPEVSGRHAAALQLYGNSAAGFP----------------------- 64
            .....|..|..|..|     |.....|.|....||..  |.|                       
  Fly    73 NDYFPAAAAYTPNLY-----PNTPQAHYANQAAYGGQ--GNPDMVDYTQLQPQRLLLQQQQQQQQ 130

Mouse    65 --HAH----------------PHPHPH---------------PSPPPGCGGGGGPGPGQDYFHAG 96
              |||                .||...               |..|.|.||||..|...:...|.
  Fly   131 QQHAHAAAAVAAQQQQQLAQQQHPQQQQQQQQANISCKYANDPVTPGGSGGGGVSGSNNNNNSAN 195

Mouse    97 AGSPTAAYQAAPP--PPHPPPPPPPPPC---------------GGIAC----------HGEPAKF 134
            :.:..:...|:|.  ......|...|..               |.:|.          |......
  Fly   196 SNNNNSQSLASPQDLSTRDISPKLSPSSVVESVARSLNKGVLGGSLAAAAAAAGLNNNHSGSGVS 260

Mouse   135 YGYDNLQRQPIFTTQQEAELVQYP---------DCKSSSGN-IGEDPDHLNQSSSPSQMFPWMR- 188
            .|..|               |..|         |.:|.||| .|...:..|...:|.|::|||: 
  Fly   261 GGPGN---------------VNVPMHSPGGGDSDSESDSGNEAGSSQNSGNGKKNPPQIYPWMKR 310

Mouse   189 -------PQAAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHTLALTERQVKIWFQNR 246
                   ..|....:|.|.:|:|:|||||||||.||.||||:||||::|.|.|||||:|||||||
  Fly   311 VHLGTSTVNANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNR 375

Mouse   247 RMKWKKEN 254
            |||||||:
  Fly   376 RMKWKKEH 383

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hoxd8NP_032302.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 62..125 21/135 (16%)
COG5576 139..272 CDD:227863 60/134 (45%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 162..184 8/22 (36%)
Antp-type hexapeptide 183..188 2/4 (50%)
Homeobox 199..251 CDD:278475 39/51 (76%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 252..289 2/3 (67%)
ScrNP_001368995.1 Homeobox 328..381 CDD:395001 40/52 (77%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000007
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X14
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.810

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