DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hoxd8 and zen2

DIOPT Version :9

Sequence 1:NP_032302.2 Gene:Hoxd8 / 15437 MGIID:96209 Length:289 Species:Mus musculus
Sequence 2:NP_476794.1 Gene:zen2 / 40827 FlyBaseID:FBgn0004054 Length:252 Species:Drosophila melanogaster


Alignment Length:112 Identity:50/112 - (44%)
Similarity:61/112 - (54%) Gaps:18/112 - (16%)


- Green bases have known domain annotations that are detailed below.


Mouse   175 NQSSSPSQMFPW--MRPQAAP--------GRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVS 229
            |.|.|...|:|.  :..:|||        ..:|.|..:|..|.:|||:||..|.||.|.||||:|
  Fly    13 NYSVSDLMMYPCVELNVEAAPTATTRSSEKSKRSRTAFSSLQLIELEREFHLNKYLARTRRIEIS 77

Mouse   230 HTLALTERQVKIWFQNRRMKWKKENNK--------DKFPASRPEAKD 268
            ..||||||||||||||||||.||..|:        ...|.|...::|
  Fly    78 QRLALTERQVKIWFQNRRMKLKKSTNRKGAIGALTTSIPLSSQSSED 124

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hoxd8NP_032302.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 62..125
COG5576 139..272 CDD:227863 50/112 (45%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 162..184 3/8 (38%)
Antp-type hexapeptide 183..188 2/6 (33%)
Homeobox 199..251 CDD:278475 35/51 (69%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 252..289 5/25 (20%)
zen2NP_476794.1 Homeobox 46..99 CDD:278475 35/52 (67%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000007
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X14
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.810

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