DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hoxd4 and unpg

DIOPT Version :9

Sequence 1:NP_034599.2 Gene:Hoxd4 / 15436 MGIID:96208 Length:250 Species:Mus musculus
Sequence 2:NP_477146.1 Gene:unpg / 35942 FlyBaseID:FBgn0015561 Length:485 Species:Drosophila melanogaster


Alignment Length:111 Identity:44/111 - (39%)
Similarity:63/111 - (56%) Gaps:11/111 - (9%)


- Green bases have known domain annotations that are detailed below.


Mouse   144 NPNYTGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWK 208
            |.:.:..:.:|.|||:|.:|:||||:|||..:||:...|.:||.:|.|||.|:||||||||.|||
  Fly   311 NGSSSNSKSRRRRTAFTSEQLLELEREFHAKKYLSLTERSQIATSLKLSEVQVKIWFQNRRAKWK 375

Mouse   209 K------DHKLPNTKGRSSSSSSCSSSAAPGQHLQPMA-KDHHTDL 247
            :      .|.|    ||:.::|..........|:...| :..|..|
  Fly   376 RVKAGLTSHGL----GRNGTTSGTKIVVPIPVHVNRFAVRSQHQQL 417

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hoxd4NP_034599.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 31..126
Antp-type hexapeptide 131..136
Homeobox 155..208 CDD:278475 31/52 (60%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 210..250 9/39 (23%)
unpgNP_477146.1 Homeobox 324..375 CDD:278475 30/50 (60%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X14
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.810

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