DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hoxd3 and ftz

DIOPT Version :10

Sequence 1:NP_034598.2 Gene:Hoxd3 / 15434 MGIID:96207 Length:433 Species:Mus musculus
Sequence 2:NP_477498.1 Gene:ftz / 40834 FlyBaseID:FBgn0001077 Length:410 Species:Drosophila melanogaster


Alignment Length:409 Identity:115/409 - (28%)
Similarity:156/409 - (38%) Gaps:134/409 - (32%)


- Green bases have known domain annotations that are detailed below.


Mouse    21 AYYENPGLFGGY----GYSKATDTYGYST----------PHQP-YPPPAAANSLDSDYPSSACSI 70
            |||:|...:.||    .||::  .|.|:.          |.|| .|||.|......|..:|..:.
  Fly    39 AYYQNTSNYQGYYPQESYSES--CYYYNNQEQVTTQTVPPVQPTTPPPKATKRKAEDDAASIIAA 101

Mouse    71 QSSAP--LRA------------PAHKGAELNGSCMRPGTGNSQGGGGGNQPPGLNSEQQPPQPPP 121
            ....|  |||            |.:....:......|......     ...|..:.:|:....|.
  Fly   102 VEERPSTLRALLTNPVKKLKYTPDYFYTTVEQVKKAPAVSTKV-----TASPAPSYDQEYVTVPT 161

Mouse   122 P----------------------------PPPTLPPSSPTNPGSGVPAKKTKGGLSASSSSSTIS 158
            |                            ||||.|.|.|...|...| .::.|..|:|:.|..|:
  Fly   162 PSASEDVDYLDVYSPQSQTQKLKNGDFATPPPTTPTSLPPLEGISTP-PQSPGEKSSSAVSQEIN 225

Mouse   159 KQI---------FPW--MKESRQNSKQKNSCATSGENCEDKSPPGPASKRVRTAYTSAQLVELEK 212
            .:|         |.|  ::|            |...:|:|       |||.|..||..|.:||||
  Fly   226 HRIVTAPNGAGDFNWSHIEE------------TLASDCKD-------SKRTRQTYTRYQTLELEK 271

Mouse   213 EFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKAKGILHSPAGQSPERSPPLGGA 277
            |||||||:.|.||:::||.|:|:||||||||||||||.|||            ::.:.||...||
  Fly   272 EFHFNRYITRRRRIDIANALSLSERQIKIWFQNRRMKSKKD------------RTLDSSPEHCGA 324

Mouse   278 AGHVAYSGQLPPVPGL------AYDAPSP-----------PAFAKSQPNMYGL-----AAYTAPL 320
                .|:..|||:...      |...|.|           ||::.|..:.|||     ...|...
  Fly   325 ----GYTAMLPPLEATSTATTGAPSVPVPMYHHHQTTAAYPAYSHSHSHGYGLLNDYPQQQTHQQ 385

Mouse   321 SSCLPQQKRYPAPEFEPHP 339
            ....|||.::.. .::.||
  Fly   386 YDAYPQQYQHQC-SYQQHP 403

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hoxd3NP_034598.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 44..198 42/217 (19%)
Antp-type hexapeptide 161..166 3/15 (20%)
Homeodomain 196..252 CDD:459649 38/55 (69%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 258..280 4/21 (19%)
DUF4074 370..431 CDD:463833
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 401..433
ftzNP_477498.1 FTZ 1..248 CDD:397787 48/228 (21%)
Homeodomain 255..311 CDD:459649 38/55 (69%)
KLF1_2_4_N <321..404 CDD:425360 21/88 (24%)
Blue background indicates that the domain is not in the aligned region.

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