DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hoxd3 and unpg

DIOPT Version :9

Sequence 1:NP_034598.2 Gene:Hoxd3 / 15434 MGIID:96207 Length:433 Species:Mus musculus
Sequence 2:NP_477146.1 Gene:unpg / 35942 FlyBaseID:FBgn0015561 Length:485 Species:Drosophila melanogaster


Alignment Length:517 Identity:118/517 - (22%)
Similarity:168/517 - (32%) Gaps:208/517 - (40%)


- Green bases have known domain annotations that are detailed below.


Mouse     2 LFEQGQL-TLELPECTMQKAAY---YENPGLFGGYGYSKATDTYGYSTPHQPYPPPAAANSLDSD 62
            |.:.|:: |:|.|...:....:   :....|.       |..|...:||  |.||.......:::
  Fly     6 LLQNGEIGTMESPTTRLASKPFPKPFSIESLI-------ANQTPATATP--PSPPEERDQEQEAE 61

Mouse    63 YP---SSACSIQSSA------PLRAPAHKG--AE--------LNGSCMRPGTGNSQGGGGGNQPP 108
            ..   |:...:.|||      ||..|...|  |:        :.|.|..|           :.|.
  Fly    62 QEQELSARAMVASSALGLTQFPLYNPWLHGYFAQNHERLTHLIAGGCYLP-----------SSPA 115

Mouse   109 GLNSEQQP-----PQPPPPPPPT------LPPSSP------------------------------ 132
            |..:.|||     ||||||.|||      |||:.|                              
  Fly   116 GHPAAQQPQAQAQPQPPPPHPPTHALEKQLPPTLPHPLDTRFLPFNPAAAGVAPTDLSYRRLAEL 180

Mouse   133 ----------------------------TNPG------------SGVPAKKTK------------ 145
                                        .|||            ...|||...            
  Fly   181 MNQDYVHSLSVHARLQHMAAAGRMHEDQANPGMAQLQEPTPPQAHSSPAKSGSHSPMEPALDVGM 245

Mouse   146 ------GGLSASSSSSTISKQIFPWMKESRQNSKQKNSCATSGENCEDK---------------- 188
                  .|.|.|..|.|:|.:.:....:..:|....||   ..|:|.|.                
  Fly   246 DEDFECSGDSCSDISLTMSPRNYNGEMDKSRNGAYTNS---DSEDCSDDEGAQSRHEGGGMGGKD 307

Mouse   189 -----SPPGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRM 248
                 |.....|:|.|||:||.||:|||:|||..:||....|.::|..|.|:|.|:||||||||.
  Fly   308 SQGNGSSSNSKSRRRRTAFTSEQLLELEREFHAKKYLSLTERSQIATSLKLSEVQVKIWFQNRRA 372

Mouse   249 KYKKDQKAKGILHSPAGQSPERSPPLGGAAGHVAYSGQLPPVPGLAYDAPSPPAFAKSQPNMYGL 313
            |:|: .|| |:.....|::           |..:.:..:.|:|              ...|.:.:
  Fly   373 KWKR-VKA-GLTSHGLGRN-----------GTTSGTKIVVPIP--------------VHVNRFAV 410

Mouse   314 AAYTAPLSS-CLPQQKRYPAPEFEPHPMASNGGGFASANLQGSPVYVGGNFVDSMAPTSGPV 374
            .:....|.. ||..    |.|:......|...|||  ....||        .::.:|:.|||
  Fly   411 RSQHQQLEKMCLSG----PKPDLRKKLSAEAIGGF--EKFSGS--------TNASSPSGGPV 458

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hoxd3NP_034598.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 44..198 55/292 (19%)
Antp-type hexapeptide 161..166 0/4 (0%)
Homeobox 199..251 CDD:278475 30/51 (59%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 258..280 2/21 (10%)
DUF4074 370..431 CDD:290032 3/5 (60%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 401..433
unpgNP_477146.1 Homeobox 324..375 CDD:278475 29/50 (58%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X14
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.810

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