DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hoxb9 and ro

DIOPT Version :10

Sequence 1:NP_032296.2 Gene:Hoxb9 / 15417 MGIID:96190 Length:250 Species:Mus musculus
Sequence 2:NP_524521.1 Gene:ro / 43234 FlyBaseID:FBgn0003267 Length:350 Species:Drosophila melanogaster


Alignment Length:252 Identity:71/252 - (28%)
Similarity:100/252 - (39%) Gaps:84/252 - (33%)


- Green bases have known domain annotations that are detailed below.


Mouse     2 SISGTLSSYYVDSIISHESEDAPPAKFPSGQYANPRQPGHAEHLDFPSCSFQPKAPVFGASWAPL 66
            |..|::||    ..||...|....|.:|:..:.     |||:  |:|.                 
  Fly    80 SDGGSVSS----PDISISDERTSLAAYPAYDFY-----GHAK--DYPQ----------------- 116

Mouse    67 SPHASGSLPSVYHPYLQPQGAPAAESRYLRTWLEPAPRAEAAPGQGQAAVKAEPLL------GAP 125
              |.|......:|.:..|   |....:.| :::.|.| |.||.|      .|.|:|      |.|
  Fly   117 --HPSQQHQQHHHHHHHP---PQLVHQKL-SYVSPPP-AIAAGG------AANPVLPHAFPAGFP 168

Mouse   126 GELLKQGTPEYSLETSAGREAVLSNQRAGYGDNKICEGSEDKERPDQTNPSANWLHARSSRKKRC 190
            .:      |.:    |||..|.|:.:|...|                           ..|::|.
  Fly   169 SD------PHF----SAGFSAFLARRRRKEG---------------------------RQRRQRT 196

Mouse   191 PYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMKKMNKEQ 247
            .::..|||.||.||..|.|::|.||.|:|..|.|:|.|:||||||||.|.|::.|.|
  Fly   197 TFSTEQTLRLEVEFHRNEYISRSRRFELAETLRLTETQIKIWFQNRRAKDKRIEKAQ 253

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hoxb9NP_032296.2 Hox9_act 1..172 CDD:461369 39/175 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 21..48 7/26 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 160..182 0/21 (0%)
Homeodomain 186..242 CDD:459649 29/55 (53%)
roNP_524521.1 Homeodomain 196..248 CDD:459649 27/51 (53%)

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