DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hoxb9 and pb

DIOPT Version :10

Sequence 1:NP_032296.2 Gene:Hoxb9 / 15417 MGIID:96190 Length:250 Species:Mus musculus
Sequence 2:NP_476669.3 Gene:pb / 40826 FlyBaseID:FBgn0051481 Length:782 Species:Drosophila melanogaster


Alignment Length:255 Identity:76/255 - (29%)
Similarity:98/255 - (38%) Gaps:75/255 - (29%)


- Green bases have known domain annotations that are detailed below.


Mouse    53 QPKAPVFGASWAPLSPHASGSLPSVYHPYLQPQGAP------------------AAESRYLRT-- 97
            |...||.|...|.:.....|...||..|.:..||.|                  :|::.|..|  
  Fly    32 QTSLPVGGCGGAGVVGGVGGVGVSVGQPGIGQQGVPPVPSVLMVNKMTPNCDKRSADTAYWMTAS 96

Mouse    98 ----------------WLEP-APRAEAAPGQG-------QAAVKAEPLLGAPGELLKQ------G 132
                            .|.| :|:.....|.|       ...|.....:|.|..::.|      .
  Fly    97 EGGFINSQPSMAEFLNHLSPESPKIGTPVGSGAIGGVGVNVNVNVGVGVGYPVGVVPQTPDGMDS 161

Mouse   133 TPEY--SLETSAGREAVLSNQRAGYGDNKICEGSEDKERPDQTNPSANWLHARSSRKKRCPYTKY 195
            .|||  ..|....|::..:|.:   |||.|.|...:...|               |:.|..||..
  Fly   162 VPEYPWMKEKKTSRKSSNNNNQ---GDNSITEFVPENGLP---------------RRLRTAYTNT 208

Mouse   196 QTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMK-----KMNKEQGKE 250
            |.|||||||.||.||.|.||.|:|..|:|:|||||:||||||||.|     |.:.|..|:
  Fly   209 QLLELEKEFHFNKYLCRPRRIEIAASLDLTERQVKVWFQNRRMKHKRQTLSKTDDEDNKD 268

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hoxb9NP_032296.2 Hox9_act 1..172 CDD:461369 36/170 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 21..48
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 160..182 3/21 (14%)
Homeodomain 186..242 CDD:459649 37/60 (62%)
pbNP_476669.3 Homeodomain 199..255 CDD:459649 36/55 (65%)
Blue background indicates that the domain is not in the aligned region.

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