DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hoxb6 and CG34367

DIOPT Version :10

Sequence 1:XP_006532355.1 Gene:Hoxb6 / 15414 MGIID:96187 Length:309 Species:Mus musculus
Sequence 2:NP_001097140.1 Gene:CG34367 / 5740879 FlyBaseID:FBgn0085396 Length:420 Species:Drosophila melanogaster


Alignment Length:258 Identity:57/258 - (22%)
Similarity:91/258 - (35%) Gaps:71/258 - (27%)


- Green bases have known domain annotations that are detailed below.


Mouse    70 IINPAEQQRPRAPPLPMSSYFVNS-----TFPVTLASGQESF---LGQLPLYSSGYADPLRHYPA 126
            :.|.....|.:.|....:|.|:||     ::..|.|||:||.   :..|.:..|...  |...|.
  Fly    24 LFNSMTGARLKKPTEVKNSIFINSISSGGSYADTCASGEESVDIDITDLSVSESNTI--LAIDPE 86

Mouse   127 PYGPGPGQDKGFAASSYYPPAGGGYGRAAPCDYGPAPAFYREKDAACALSGADEPPP-------- 183
            |......|.:....:                 |..:|..::         .|.||.|        
  Fly    87 PTEESHSQREEHVET-----------------YSLSPTLHK---------AAVEPKPKNWLISED 125

Mouse   184 ----FHPEPRK---------SDCAQDKSVFGETEEQKCSTPVYPW----------MQRMNSCNSS 225
                ..||..|         ::|.:|.:    |.:.....|:.|.          .:..:..::|
  Fly   126 LDVDSQPEDPKMSGLPTASITECTEDSN----TPKLAPDKPLLPEECVSPEPSRNREHCDPLDTS 186

Mouse   226 SFGPSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 288
            ......||.|..:|..|..|||:.|....|.....|.|::..|.|:|.::::||||||.|.:|
  Fly   187 LVNTKQRRSRTNFTLDQLNELERLFEETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRK 249

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hoxb6XP_006532355.1 Homeodomain 232..288 CDD:459649 22/55 (40%)
CG34367NP_001097140.1 Homeodomain 193..249 CDD:459649 22/55 (40%)
OAR 392..410 CDD:461067
Blue background indicates that the domain is not in the aligned region.

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