Protein Alignment Hoxb4 and lms

DIOPT Version :10

• Sequence 1: NP_034589.3
• Gene: Hoxb4 / 15412
• MGIID: 96185
• Length: 250
• Species: Mus musculus
• Sequence 2: NP_611491.2
• Gene: lms / 37322
• FlyBaseID: FBgn0034520
• Length: 378
• Species: Drosophila melanogaster
• Alignment Length: 173
• Identity: 49/173 - (28%)
• Similarity: 71/173 - (41%)
• Gaps: 51/173 - (29%)

Mouse   129 SPSHSACKEPVVYPWMRKVHVSTVNPNYAGGE-PKRSRTAYTRQQVLELEKEFHYNRYLTRRRRV 192
            ||:.|:|.:..:......:.:::.:.|..|.: .||.|||::..|:..||.||...:||:..:|.
  Fly    53 SPATSSCLDDNMDDGKSDIDLASDDGNGLGDDRKKRPRTAFSAAQIKALETEFERGKYLSVAKRT 117

Mouse   193 EIAHALCLSERQIKIWFQNRRMKWKKDH------------------------------------- 220
            .:|..|.|:|.||||||||||.|||:.:
  Fly   118 ALAKQLQLTETQIKIWFQNRRTKWKRKYTSDVETLASHYYAQLGIGGLARPMVVGDRLWLFSQTP 182

Mouse   221 --KLPNTKIRSGGTAGA--------AGGPPGRP---NGGPPAL 250
              ..|...|...|:..|        |.|.|.||   :||.|.|
  Fly   183 TGPTPIQSIMLNGSGSAAPMASATTATGSPMRPYATSGGMPPL 225

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Hoxb4	NP_034589.3	Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	1..133		2/3 (67%)
		Antp-type hexapeptide	140..145		0/4 (0%)
		Homeodomain	162..218	CDD:459649	29/55 (53%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	219..250		12/80 (15%)
lms	NP_611491.2	Cnd2	33..>106	CDD:450400	15/52 (29%)
		Homeodomain	87..143	CDD:459649	29/55 (53%)