DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hoxb3 and abd-A

DIOPT Version :10

Sequence 1:NP_034588.2 Gene:Hoxb3 / 15410 MGIID:96184 Length:433 Species:Mus musculus
Sequence 2:NP_732176.1 Gene:abd-A / 42037 FlyBaseID:FBgn0000014 Length:590 Species:Drosophila melanogaster


Alignment Length:324 Identity:86/324 - (26%)
Similarity:112/324 - (34%) Gaps:109/324 - (33%)


- Green bases have known domain annotations that are detailed below.


Mouse    38 QAATHLEGDYQRSACSLQSLGNA-----APHAKSKELNGSCMRPGLAPEP-LPAPPG-------- 88
            |...||....|:......||..|     ..|..||....:....|.|.:. |..||.        
  Fly   136 QQQQHLHHQQQQHHHQYSSLSAALQLQQQQHHISKLAAAAVASHGHAHQQLLLTPPSAGNSQAGD 200

Mouse    89 ---SPPPSAAPTSTTSNSNNGGGPSKSGPPKCGAGSNSTL-----------------TKQIFPWM 133
               ||.|||:.:|:...|.|...|..:......:.::|..                 |.:::|::
  Fly   201 SSCSPSPSASGSSSLHRSLNDNSPGSASASASASAASSVAAAAAAAAAAASSSFAIPTSKMYPYV 265

Mouse   134 KE----------------------SRQTSKLKNS----------------------------SPG 148
            ..                      ||.|..:.||                            |..
  Fly   266 SNHPSSHGGLSGMAGFTGLEDKSCSRYTDTVMNSYQSMSVPASASAQFAQFYQHATAAASAVSAA 330

Mouse   149 TAEGCGGGGGGGGGGGGGGGGSSGGGGGGGGG-------------------------GDKSPPGS 188
            :|...|....|........|...|.||.||.|                         ||.:.|..
  Fly   331 SAGAIGVDSLGNACTQPASGVMPGAGGAGGAGIADLPRYPWMTLTDWMGSPFERVVCGDFNGPNG 395

Mouse   189 AASKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKA 252
            ...:|.|..||..|.:|||||||||.||.|.||:|:|:.|.|:||||||||||||||.||:.:|
  Fly   396 CPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKELRA 459

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hoxb3NP_034588.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 63..124 17/72 (24%)
Antp-type hexapeptide 129..134 1/4 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 136..195 20/111 (18%)
Homeodomain 192..248 CDD:459649 37/55 (67%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 249..276 1/4 (25%)
DUF4074 369..431 CDD:463833
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 389..433
abd-ANP_732176.1 Homeodomain 399..455 CDD:459649 37/55 (67%)
Abdominal-A 456..478 CDD:403567 1/4 (25%)
Blue background indicates that the domain is not in the aligned region.

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